Results 81 - 100 of 134 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6373 | 3' | -55.9 | NC_001847.1 | + | 44302 | 0.68 | 0.787813 |
Target: 5'- -cGCGGCGcgGCGGGCCa-GCgccaGAGCGg -3' miRNA: 3'- gaCGCUGCa-CGCCCGGcaCGa---UUUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 134632 | 0.68 | 0.787813 |
Target: 5'- -aGCGugGgcuggggGCGGGCCG-GC--AGCAg -3' miRNA: 3'- gaCGCugCa------CGCCCGGCaCGauUUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 5221 | 0.68 | 0.778485 |
Target: 5'- -cGCGGCGgccgGCGGGgCGcGCgcGGCAa -3' miRNA: 3'- gaCGCUGCa---CGCCCgGCaCGauUUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 108034 | 0.68 | 0.778485 |
Target: 5'- -cGCGGCGgccgGCGGGgCGcGCgcGGCAa -3' miRNA: 3'- gaCGCUGCa---CGCCCgGCaCGauUUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 59559 | 0.68 | 0.778485 |
Target: 5'- -gGCGGCGgggGCGGuGCCG-GCggAAGCu -3' miRNA: 3'- gaCGCUGCa--CGCC-CGGCaCGa-UUUGu -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 125574 | 0.69 | 0.759436 |
Target: 5'- -cGCGGCc-GCGGGCgGcggGCUGGACGg -3' miRNA: 3'- gaCGCUGcaCGCCCGgCa--CGAUUUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 121414 | 0.69 | 0.759436 |
Target: 5'- gCUGCGugGaggGCGGaGCCGU--UGAGCGg -3' miRNA: 3'- -GACGCugCa--CGCC-CGGCAcgAUUUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 108740 | 0.69 | 0.759436 |
Target: 5'- aCUGCGACGcgacgGCGuuccuGCCGcGCUGGGCGc -3' miRNA: 3'- -GACGCUGCa----CGCc----CGGCaCGAUUUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 88816 | 0.69 | 0.759436 |
Target: 5'- -cGCGGCccGCGggcGGCCGUGCUGcGCu -3' miRNA: 3'- gaCGCUGcaCGC---CCGGCACGAUuUGu -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 77211 | 0.69 | 0.749734 |
Target: 5'- -cGCGACGgagccGCGGGCCGccggGCccGGACu -3' miRNA: 3'- gaCGCUGCa----CGCCCGGCa---CGa-UUUGu -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 51603 | 0.69 | 0.749734 |
Target: 5'- -gGCGGCGUgaacauucucaGCGGGCCGcuggGCUuccuggugAAGCAg -3' miRNA: 3'- gaCGCUGCA-----------CGCCCGGCa---CGA--------UUUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 79370 | 0.69 | 0.748758 |
Target: 5'- aUGCGAagcUGUGCGGcagcgcgcggcucGCCGUgggGCUGAGCGc -3' miRNA: 3'- gACGCU---GCACGCC-------------CGGCA---CGAUUUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 62142 | 0.69 | 0.739926 |
Target: 5'- -aGCGGCGUGCGcauGGCCGcgGCg--GCGu -3' miRNA: 3'- gaCGCUGCACGC---CCGGCa-CGauuUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 85649 | 0.69 | 0.739926 |
Target: 5'- -gGCGcGCGUcagguuugGCGcGGCCGUGCUGGcgcGCAg -3' miRNA: 3'- gaCGC-UGCA--------CGC-CCGGCACGAUU---UGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 122757 | 0.69 | 0.730022 |
Target: 5'- gCUGCGcauacACGgucCGGGCCGUGCgcuccAGCAg -3' miRNA: 3'- -GACGC-----UGCac-GCCCGGCACGau---UUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 78983 | 0.69 | 0.720031 |
Target: 5'- -gGgGGCGUGCucGGGCgGcUGCUGAGCc -3' miRNA: 3'- gaCgCUGCACG--CCCGgC-ACGAUUUGu -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 26030 | 0.69 | 0.720031 |
Target: 5'- -gGCGGCagcaaaagGUGCGGGCCagGUGCUcgcucggcAGGCAa -3' miRNA: 3'- gaCGCUG--------CACGCCCGG--CACGA--------UUUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 30141 | 0.69 | 0.720031 |
Target: 5'- -cGCGACGcGCGGcgcGCCGUGCg----- -3' miRNA: 3'- gaCGCUGCaCGCC---CGGCACGauuugu -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 74895 | 0.69 | 0.709964 |
Target: 5'- cCUGCGAaGU-CGGcGCCGUGCUAGc-- -3' miRNA: 3'- -GACGCUgCAcGCC-CGGCACGAUUugu -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 34174 | 0.69 | 0.709964 |
Target: 5'- gCUGaGGCGcUGCGGGCCGgggGCgc-GCAc -3' miRNA: 3'- -GACgCUGC-ACGCCCGGCa--CGauuUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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