miRNA display CGI


Results 41 - 60 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6373 3' -55.9 NC_001847.1 + 33708 0.68 0.796997
Target:  5'- -cGCGGCGgcGCGuGGCCGaGCUGGGgGa -3'
miRNA:   3'- gaCGCUGCa-CGC-CCGGCaCGAUUUgU- -5'
6373 3' -55.9 NC_001847.1 + 34174 0.69 0.709964
Target:  5'- gCUGaGGCGcUGCGGGCCGgggGCgc-GCAc -3'
miRNA:   3'- -GACgCUGC-ACGCCCGGCa--CGauuUGU- -5'
6373 3' -55.9 NC_001847.1 + 36001 0.67 0.823601
Target:  5'- gCUGCaGGCGgccGCGGGCgugGUGCUGGGg- -3'
miRNA:   3'- -GACG-CUGCa--CGCCCGg--CACGAUUUgu -5'
6373 3' -55.9 NC_001847.1 + 36445 0.66 0.8718
Target:  5'- -aGCGGCGcgcgcgGCGcGGCUGUG-UGAGCGg -3'
miRNA:   3'- gaCGCUGCa-----CGC-CCGGCACgAUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 37594 0.68 0.809597
Target:  5'- gCUGCGGCGgccGgGGGCCGgcccgcGCUcuuuugcccgacgggGAGCAg -3'
miRNA:   3'- -GACGCUGCa--CgCCCGGCa-----CGA---------------UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 38757 0.78 0.287631
Target:  5'- -aGCGugGcgGCGGGcCCGUGCUgGAGCAc -3'
miRNA:   3'- gaCGCugCa-CGCCC-GGCACGA-UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 43597 0.67 0.848604
Target:  5'- -aGCGugGcGCugGGGCCgGUGCUGGccACGg -3'
miRNA:   3'- gaCGCugCaCG--CCCGG-CACGAUU--UGU- -5'
6373 3' -55.9 NC_001847.1 + 44302 0.68 0.787813
Target:  5'- -cGCGGCGcgGCGGGCCa-GCgccaGAGCGg -3'
miRNA:   3'- gaCGCUGCa-CGCCCGGcaCGa---UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 45527 0.68 0.796997
Target:  5'- -gGCGGCGcgGacgGGGCCGUGCcgcGCAg -3'
miRNA:   3'- gaCGCUGCa-Cg--CCCGGCACGauuUGU- -5'
6373 3' -55.9 NC_001847.1 + 47635 0.78 0.267799
Target:  5'- -gGCGGCG-GCGGGCaCGUGC-AAGCAg -3'
miRNA:   3'- gaCGCUGCaCGCCCG-GCACGaUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 47860 0.66 0.8718
Target:  5'- -cGCGGCc-GCGGGCCGUcgGCgc-GCAc -3'
miRNA:   3'- gaCGCUGcaCGCCCGGCA--CGauuUGU- -5'
6373 3' -55.9 NC_001847.1 + 50674 0.76 0.338344
Target:  5'- -gGCGACGUgcccuGCGGGCUGUGCUcgcGCGa -3'
miRNA:   3'- gaCGCUGCA-----CGCCCGGCACGAuu-UGU- -5'
6373 3' -55.9 NC_001847.1 + 51603 0.69 0.749734
Target:  5'- -gGCGGCGUgaacauucucaGCGGGCCGcuggGCUuccuggugAAGCAg -3'
miRNA:   3'- gaCGCUGCA-----------CGCCCGGCa---CGA--------UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 52119 0.66 0.899633
Target:  5'- -aGCGGCc-GCGGGCCGgcgGCgccccAGCGg -3'
miRNA:   3'- gaCGCUGcaCGCCCGGCa--CGau---UUGU- -5'
6373 3' -55.9 NC_001847.1 + 53934 0.66 0.86428
Target:  5'- -gGCGACG-GCGGcuCUGUGCgcgAGGCGg -3'
miRNA:   3'- gaCGCUGCaCGCCc-GGCACGa--UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 53986 0.7 0.66911
Target:  5'- -aGCGGCGcgGCGGGCCaGUcgucGCUuAACAc -3'
miRNA:   3'- gaCGCUGCa-CGCCCGG-CA----CGAuUUGU- -5'
6373 3' -55.9 NC_001847.1 + 54383 0.67 0.856546
Target:  5'- gCUGCGGCGgGCGG-CCGcggGCgAGGCGg -3'
miRNA:   3'- -GACGCUGCaCGCCcGGCa--CGaUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 55500 0.66 0.886176
Target:  5'- -gGCGACGU--GGGCCcUGCUGcuGGCGg -3'
miRNA:   3'- gaCGCUGCAcgCCCGGcACGAU--UUGU- -5'
6373 3' -55.9 NC_001847.1 + 57044 0.68 0.787813
Target:  5'- -cGCGcCcUGUGGGCCGaggcgGCUAAGCu -3'
miRNA:   3'- gaCGCuGcACGCCCGGCa----CGAUUUGu -5'
6373 3' -55.9 NC_001847.1 + 57669 0.66 0.886176
Target:  5'- -gGCaGGCG-GUGGGCacggugGUGCUGGGCGc -3'
miRNA:   3'- gaCG-CUGCaCGCCCGg-----CACGAUUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.