miRNA display CGI


Results 61 - 80 of 134 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6373 3' -55.9 NC_001847.1 + 58671 0.7 0.699829
Target:  5'- uUGCGGCGguuggGCGGGCgGcagGCUGGcCAu -3'
miRNA:   3'- gACGCUGCa----CGCCCGgCa--CGAUUuGU- -5'
6373 3' -55.9 NC_001847.1 + 59559 0.68 0.778485
Target:  5'- -gGCGGCGgggGCGGuGCCG-GCggAAGCu -3'
miRNA:   3'- gaCGCUGCa--CGCC-CGGCaCGa-UUUGu -5'
6373 3' -55.9 NC_001847.1 + 62142 0.69 0.739926
Target:  5'- -aGCGGCGUGCGcauGGCCGcgGCg--GCGu -3'
miRNA:   3'- gaCGCUGCACGC---CCGGCa-CGauuUGU- -5'
6373 3' -55.9 NC_001847.1 + 62522 0.66 0.886176
Target:  5'- gUGCGGCacggGCGGcacguGCCGUGCggccAGCAg -3'
miRNA:   3'- gACGCUGca--CGCC-----CGGCACGau--UUGU- -5'
6373 3' -55.9 NC_001847.1 + 63428 0.7 0.66911
Target:  5'- -cGCGGCGccgGCGGGCCG-GCgcaccgcGCAg -3'
miRNA:   3'- gaCGCUGCa--CGCCCGGCaCGauu----UGU- -5'
6373 3' -55.9 NC_001847.1 + 64469 0.66 0.879101
Target:  5'- -gGCGGCGcgGgGGGCCGaaGCaggGAGCAc -3'
miRNA:   3'- gaCGCUGCa-CgCCCGGCa-CGa--UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 65878 0.66 0.86428
Target:  5'- -aGCuGACGUGgGGGCCGcccaUGCgccACGc -3'
miRNA:   3'- gaCG-CUGCACgCCCGGC----ACGauuUGU- -5'
6373 3' -55.9 NC_001847.1 + 66177 0.71 0.638114
Target:  5'- gUGCc-CGcGCGGGCCGcGCUGGACGc -3'
miRNA:   3'- gACGcuGCaCGCCCGGCaCGAUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 67672 0.66 0.899633
Target:  5'- aCUGCGACGacgccGCGGccGCCGcgcgcgcGCUGGACc -3'
miRNA:   3'- -GACGCUGCa----CGCC--CGGCa------CGAUUUGu -5'
6373 3' -55.9 NC_001847.1 + 68793 0.68 0.796997
Target:  5'- -cGCGGCGgccgcgcgaGCGGGCCGacggGggGAACAa -3'
miRNA:   3'- gaCGCUGCa--------CGCCCGGCa---CgaUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 69295 0.67 0.832124
Target:  5'- -cGCgGGCGUGCGGGCgGaccgGCUGc--- -3'
miRNA:   3'- gaCG-CUGCACGCCCGgCa---CGAUuugu -5'
6373 3' -55.9 NC_001847.1 + 70463 0.7 0.678366
Target:  5'- aCUGCGACacgcGCGGGCgcccgguggauggCGUGCUGGugAc -3'
miRNA:   3'- -GACGCUGca--CGCCCG-------------GCACGAUUugU- -5'
6373 3' -55.9 NC_001847.1 + 71442 0.68 0.806029
Target:  5'- -cGCGACGgGCGcGGCUuugaGCUGAGCGu -3'
miRNA:   3'- gaCGCUGCaCGC-CCGGca--CGAUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 72583 0.68 0.805133
Target:  5'- -cGCGAUGcGCGGGCUGggccaaaacgcgcUGCUGGccGCAc -3'
miRNA:   3'- gaCGCUGCaCGCCCGGC-------------ACGAUU--UGU- -5'
6373 3' -55.9 NC_001847.1 + 73239 0.67 0.855761
Target:  5'- -gGCGGCG-GCGcgggcgcgcucgaGGCCGUGCgc-GCAc -3'
miRNA:   3'- gaCGCUGCaCGC-------------CCGGCACGauuUGU- -5'
6373 3' -55.9 NC_001847.1 + 73767 0.68 0.806029
Target:  5'- -gGCGGCGgcGCGGGCCGcuacgaGCgcgGGGCGc -3'
miRNA:   3'- gaCGCUGCa-CGCCCGGCa-----CGa--UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 73780 0.66 0.86428
Target:  5'- -cGCGACGccucgccggUGCGGggcugccuGCCGguggGCUAGGCGc -3'
miRNA:   3'- gaCGCUGC---------ACGCC--------CGGCa---CGAUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 74895 0.69 0.709964
Target:  5'- cCUGCGAaGU-CGGcGCCGUGCUAGc-- -3'
miRNA:   3'- -GACGCUgCAcGCC-CGGCACGAUUugu -5'
6373 3' -55.9 NC_001847.1 + 77211 0.69 0.749734
Target:  5'- -cGCGACGgagccGCGGGCCGccggGCccGGACu -3'
miRNA:   3'- gaCGCUGCa----CGCCCGGCa---CGa-UUUGu -5'
6373 3' -55.9 NC_001847.1 + 77574 0.67 0.848604
Target:  5'- -cGCGGCcGcGCGGGCCGaGCUc-GCAc -3'
miRNA:   3'- gaCGCUG-CaCGCCCGGCaCGAuuUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.