Results 101 - 120 of 134 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6373 | 3' | -55.9 | NC_001847.1 | + | 102852 | 0.66 | 0.86428 |
Target: 5'- -gGCGGCGUcGCGGGgCCGcGCcacgcGGACGg -3' miRNA: 3'- gaCGCUGCA-CGCCC-GGCaCGa----UUUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 102999 | 0.66 | 0.86428 |
Target: 5'- -cGCGGCGUgcGCGGGCgCGgcgGCgcccAGCGc -3' miRNA: 3'- gaCGCUGCA--CGCCCG-GCa--CGau--UUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 103033 | 0.67 | 0.840461 |
Target: 5'- -gGCGGCGgGCGGGCCGcaGCc--GCGu -3' miRNA: 3'- gaCGCUGCaCGCCCGGCa-CGauuUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 104917 | 0.66 | 0.879101 |
Target: 5'- -cGCGGCG-GCGGGCCGcgaucucgGCc-AGCGc -3' miRNA: 3'- gaCGCUGCaCGCCCGGCa-------CGauUUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 105822 | 0.7 | 0.688613 |
Target: 5'- -cGCGcuccaccGCGUcGCGGGCCGcGCcGAGCAg -3' miRNA: 3'- gaCGC-------UGCA-CGCCCGGCaCGaUUUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 105970 | 0.66 | 0.899633 |
Target: 5'- -gGCGGCGcgGCGGGCCGccuccaGCgccucgcGGCAg -3' miRNA: 3'- gaCGCUGCa-CGCCCGGCa-----CGau-----UUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 107875 | 0.67 | 0.8149 |
Target: 5'- -cGgGACGgacgGCGGGCCGggaGCgggcGGCAg -3' miRNA: 3'- gaCgCUGCa---CGCCCGGCa--CGau--UUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 108034 | 0.68 | 0.778485 |
Target: 5'- -cGCGGCGgccgGCGGGgCGcGCgcGGCAa -3' miRNA: 3'- gaCGCUGCa---CGCCCgGCaCGauUUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 108740 | 0.69 | 0.759436 |
Target: 5'- aCUGCGACGcgacgGCGuuccuGCCGcGCUGGGCGc -3' miRNA: 3'- -GACGCUGCa----CGCc----CGGCaCGAUUUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 110222 | 1.09 | 0.00253 |
Target: 5'- aCUGCGACGUGCGGGCCGUGCUAAACAu -3' miRNA: 3'- -GACGCUGCACGCCCGGCACGAUUUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 112555 | 0.67 | 0.8149 |
Target: 5'- -cGCGACcggGCGGGCCcUGCcccgGGGCGc -3' miRNA: 3'- gaCGCUGca-CGCCCGGcACGa---UUUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 114050 | 0.67 | 0.8149 |
Target: 5'- -gGCGugGUGaUGGcGUCGUGCUuuACc -3' miRNA: 3'- gaCGCugCAC-GCC-CGGCACGAuuUGu -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 116444 | 0.74 | 0.44869 |
Target: 5'- -cGCGGCGcuggcggugacGCGGGCCGUGCU--GCGg -3' miRNA: 3'- gaCGCUGCa----------CGCCCGGCACGAuuUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 117531 | 0.67 | 0.856546 |
Target: 5'- -gGCGACGa-CGaGGCCGUGCgcAACc -3' miRNA: 3'- gaCGCUGCacGC-CCGGCACGauUUGu -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 118992 | 0.66 | 0.893022 |
Target: 5'- -gGCGGCGUGCGacauGCUGgcGCUGAucGCAg -3' miRNA: 3'- gaCGCUGCACGCc---CGGCa-CGAUU--UGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 119526 | 0.71 | 0.648462 |
Target: 5'- -gGCGGCG-GcCGcGGCCGgcagGCUGGGCAa -3' miRNA: 3'- gaCGCUGCaC-GC-CCGGCa---CGAUUUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 121414 | 0.69 | 0.759436 |
Target: 5'- gCUGCGugGaggGCGGaGCCGU--UGAGCGg -3' miRNA: 3'- -GACGCugCa--CGCC-CGGCAcgAUUUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 122757 | 0.69 | 0.730022 |
Target: 5'- gCUGCGcauacACGgucCGGGCCGUGCgcuccAGCAg -3' miRNA: 3'- -GACGC-----UGCac-GCCCGGCACGau---UUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 123085 | 0.66 | 0.8718 |
Target: 5'- -aGCGACGaUGaCGGGCCc-GCUAG-CAa -3' miRNA: 3'- gaCGCUGC-AC-GCCCGGcaCGAUUuGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 123468 | 0.67 | 0.848604 |
Target: 5'- -gGCGACGgccgccGCGGGCuCG-GCUGGGg- -3' miRNA: 3'- gaCGCUGCa-----CGCCCG-GCaCGAUUUgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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