miRNA display CGI


Results 21 - 40 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6373 3' -55.9 NC_001847.1 + 117531 0.67 0.856546
Target:  5'- -gGCGACGa-CGaGGCCGUGCgcAACc -3'
miRNA:   3'- gaCGCUGCacGC-CCGGCACGauUUGu -5'
6373 3' -55.9 NC_001847.1 + 116444 0.74 0.44869
Target:  5'- -cGCGGCGcuggcggugacGCGGGCCGUGCU--GCGg -3'
miRNA:   3'- gaCGCUGCa----------CGCCCGGCACGAuuUGU- -5'
6373 3' -55.9 NC_001847.1 + 114050 0.67 0.8149
Target:  5'- -gGCGugGUGaUGGcGUCGUGCUuuACc -3'
miRNA:   3'- gaCGCugCAC-GCC-CGGCACGAuuUGu -5'
6373 3' -55.9 NC_001847.1 + 112555 0.67 0.8149
Target:  5'- -cGCGACcggGCGGGCCcUGCcccgGGGCGc -3'
miRNA:   3'- gaCGCUGca-CGCCCGGcACGa---UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 110222 1.09 0.00253
Target:  5'- aCUGCGACGUGCGGGCCGUGCUAAACAu -3'
miRNA:   3'- -GACGCUGCACGCCCGGCACGAUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 108740 0.69 0.759436
Target:  5'- aCUGCGACGcgacgGCGuuccuGCCGcGCUGGGCGc -3'
miRNA:   3'- -GACGCUGCa----CGCc----CGGCaCGAUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 108034 0.68 0.778485
Target:  5'- -cGCGGCGgccgGCGGGgCGcGCgcGGCAa -3'
miRNA:   3'- gaCGCUGCa---CGCCCgGCaCGauUUGU- -5'
6373 3' -55.9 NC_001847.1 + 107875 0.67 0.8149
Target:  5'- -cGgGACGgacgGCGGGCCGggaGCgggcGGCAg -3'
miRNA:   3'- gaCgCUGCa---CGCCCGGCa--CGau--UUGU- -5'
6373 3' -55.9 NC_001847.1 + 105970 0.66 0.899633
Target:  5'- -gGCGGCGcgGCGGGCCGccuccaGCgccucgcGGCAg -3'
miRNA:   3'- gaCGCUGCa-CGCCCGGCa-----CGau-----UUGU- -5'
6373 3' -55.9 NC_001847.1 + 105822 0.7 0.688613
Target:  5'- -cGCGcuccaccGCGUcGCGGGCCGcGCcGAGCAg -3'
miRNA:   3'- gaCGC-------UGCA-CGCCCGGCaCGaUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 104917 0.66 0.879101
Target:  5'- -cGCGGCG-GCGGGCCGcgaucucgGCc-AGCGc -3'
miRNA:   3'- gaCGCUGCaCGCCCGGCa-------CGauUUGU- -5'
6373 3' -55.9 NC_001847.1 + 103033 0.67 0.840461
Target:  5'- -gGCGGCGgGCGGGCCGcaGCc--GCGu -3'
miRNA:   3'- gaCGCUGCaCGCCCGGCa-CGauuUGU- -5'
6373 3' -55.9 NC_001847.1 + 102999 0.66 0.86428
Target:  5'- -cGCGGCGUgcGCGGGCgCGgcgGCgcccAGCGc -3'
miRNA:   3'- gaCGCUGCA--CGCCCG-GCa--CGau--UUGU- -5'
6373 3' -55.9 NC_001847.1 + 102852 0.66 0.86428
Target:  5'- -gGCGGCGUcGCGGGgCCGcGCcacgcGGACGg -3'
miRNA:   3'- gaCGCUGCA-CGCCC-GGCaCGa----UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 102678 0.66 0.86428
Target:  5'- aUGUGAUGaacgcgcugGCGGGCgUGUGCUGcGGCAg -3'
miRNA:   3'- gACGCUGCa--------CGCCCG-GCACGAU-UUGU- -5'
6373 3' -55.9 NC_001847.1 + 102581 0.71 0.627761
Target:  5'- -aGCGGCGgGCGGcGCCauccUGCUGGGCGa -3'
miRNA:   3'- gaCGCUGCaCGCC-CGGc---ACGAUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 100644 0.69 0.709964
Target:  5'- gCUGCGGCGccaGGGCCGcGCUGcugcGGCGg -3'
miRNA:   3'- -GACGCUGCacgCCCGGCaCGAU----UUGU- -5'
6373 3' -55.9 NC_001847.1 + 96389 0.66 0.879101
Target:  5'- -gGCGGCGgcaaugGCgGGGCCG-GCggcGGCAa -3'
miRNA:   3'- gaCGCUGCa-----CG-CCCGGCaCGau-UUGU- -5'
6373 3' -55.9 NC_001847.1 + 96347 0.67 0.823601
Target:  5'- -gGCGGCGgcaaugGCgGGGCCG-GCgguGGCAa -3'
miRNA:   3'- gaCGCUGCa-----CG-CCCGGCaCGau-UUGU- -5'
6373 3' -55.9 NC_001847.1 + 96305 0.66 0.879101
Target:  5'- -gGCGGCGgcaaugGCgGGGCCG-GCggcGGCAa -3'
miRNA:   3'- gaCGCUGCa-----CG-CCCGGCaCGau-UUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.