miRNA display CGI


Results 41 - 60 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6373 3' -55.9 NC_001847.1 + 89542 0.66 0.867314
Target:  5'- -aGCGACGggucagauuggcccGCGGGCCGcG-UGAGCAc -3'
miRNA:   3'- gaCGCUGCa-------------CGCCCGGCaCgAUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 88816 0.69 0.759436
Target:  5'- -cGCGGCccGCGggcGGCCGUGCUGcGCu -3'
miRNA:   3'- gaCGCUGcaCGC---CCGGCACGAUuUGu -5'
6373 3' -55.9 NC_001847.1 + 86636 0.66 0.86428
Target:  5'- -cGUGugG-GCGGGCCGcGCcgccccgGAGCGc -3'
miRNA:   3'- gaCGCugCaCGCCCGGCaCGa------UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 86519 0.66 0.893022
Target:  5'- -cGCGGCG-GCuGGGCgcccgCGUGCUGgcGGCGc -3'
miRNA:   3'- gaCGCUGCaCG-CCCG-----GCACGAU--UUGU- -5'
6373 3' -55.9 NC_001847.1 + 86388 0.72 0.555816
Target:  5'- -cGCGGCG-GCGGGCgCGcgGCUGAGuCAu -3'
miRNA:   3'- gaCGCUGCaCGCCCG-GCa-CGAUUU-GU- -5'
6373 3' -55.9 NC_001847.1 + 85793 0.68 0.806029
Target:  5'- gUGCGcgucgaGgGUGCGGGCgCGUGCagcGACGg -3'
miRNA:   3'- gACGC------UgCACGCCCG-GCACGau-UUGU- -5'
6373 3' -55.9 NC_001847.1 + 85649 0.69 0.739926
Target:  5'- -gGCGcGCGUcagguuugGCGcGGCCGUGCUGGcgcGCAg -3'
miRNA:   3'- gaCGC-UGCA--------CGC-CCGGCACGAUU---UGU- -5'
6373 3' -55.9 NC_001847.1 + 82472 0.72 0.552775
Target:  5'- gUGCGGCGUGCcgugggacgagcccGcGGCCGUGC-GGGCGg -3'
miRNA:   3'- gACGCUGCACG--------------C-CCGGCACGaUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 81236 0.74 0.457981
Target:  5'- -aGCGGCG-GCGGGCCaG-GCUGGGCc -3'
miRNA:   3'- gaCGCUGCaCGCCCGG-CaCGAUUUGu -5'
6373 3' -55.9 NC_001847.1 + 81054 0.71 0.627761
Target:  5'- -gGCGACGUgggcGUGGGCgGggccugGCUGGACGg -3'
miRNA:   3'- gaCGCUGCA----CGCCCGgCa-----CGAUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 79370 0.69 0.748758
Target:  5'- aUGCGAagcUGUGCGGcagcgcgcggcucGCCGUgggGCUGAGCGc -3'
miRNA:   3'- gACGCU---GCACGCC-------------CGGCA---CGAUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 79261 0.66 0.879101
Target:  5'- -aGcCGGCGU-CGGGCCGcGCggcgAAGCGg -3'
miRNA:   3'- gaC-GCUGCAcGCCCGGCaCGa---UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 79084 0.67 0.832124
Target:  5'- gUGCGACGUGUGc-CCGUGCgccGCGc -3'
miRNA:   3'- gACGCUGCACGCccGGCACGauuUGU- -5'
6373 3' -55.9 NC_001847.1 + 78983 0.69 0.720031
Target:  5'- -gGgGGCGUGCucGGGCgGcUGCUGAGCc -3'
miRNA:   3'- gaCgCUGCACG--CCCGgC-ACGAUUUGu -5'
6373 3' -55.9 NC_001847.1 + 77574 0.67 0.848604
Target:  5'- -cGCGGCcGcGCGGGCCGaGCUc-GCAc -3'
miRNA:   3'- gaCGCUG-CaCGCCCGGCaCGAuuUGU- -5'
6373 3' -55.9 NC_001847.1 + 77211 0.69 0.749734
Target:  5'- -cGCGACGgagccGCGGGCCGccggGCccGGACu -3'
miRNA:   3'- gaCGCUGCa----CGCCCGGCa---CGa-UUUGu -5'
6373 3' -55.9 NC_001847.1 + 74895 0.69 0.709964
Target:  5'- cCUGCGAaGU-CGGcGCCGUGCUAGc-- -3'
miRNA:   3'- -GACGCUgCAcGCC-CGGCACGAUUugu -5'
6373 3' -55.9 NC_001847.1 + 73780 0.66 0.86428
Target:  5'- -cGCGACGccucgccggUGCGGggcugccuGCCGguggGCUAGGCGc -3'
miRNA:   3'- gaCGCUGC---------ACGCC--------CGGCa---CGAUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 73767 0.68 0.806029
Target:  5'- -gGCGGCGgcGCGGGCCGcuacgaGCgcgGGGCGc -3'
miRNA:   3'- gaCGCUGCa-CGCCCGGCa-----CGa--UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 73239 0.67 0.855761
Target:  5'- -gGCGGCG-GCGcgggcgcgcucgaGGCCGUGCgc-GCAc -3'
miRNA:   3'- gaCGCUGCaCGC-------------CCGGCACGauuUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.