miRNA display CGI


Results 61 - 80 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6373 3' -55.9 NC_001847.1 + 72583 0.68 0.805133
Target:  5'- -cGCGAUGcGCGGGCUGggccaaaacgcgcUGCUGGccGCAc -3'
miRNA:   3'- gaCGCUGCaCGCCCGGC-------------ACGAUU--UGU- -5'
6373 3' -55.9 NC_001847.1 + 71442 0.68 0.806029
Target:  5'- -cGCGACGgGCGcGGCUuugaGCUGAGCGu -3'
miRNA:   3'- gaCGCUGCaCGC-CCGGca--CGAUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 70463 0.7 0.678366
Target:  5'- aCUGCGACacgcGCGGGCgcccgguggauggCGUGCUGGugAc -3'
miRNA:   3'- -GACGCUGca--CGCCCG-------------GCACGAUUugU- -5'
6373 3' -55.9 NC_001847.1 + 69295 0.67 0.832124
Target:  5'- -cGCgGGCGUGCGGGCgGaccgGCUGc--- -3'
miRNA:   3'- gaCG-CUGCACGCCCGgCa---CGAUuugu -5'
6373 3' -55.9 NC_001847.1 + 68793 0.68 0.796997
Target:  5'- -cGCGGCGgccgcgcgaGCGGGCCGacggGggGAACAa -3'
miRNA:   3'- gaCGCUGCa--------CGCCCGGCa---CgaUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 67672 0.66 0.899633
Target:  5'- aCUGCGACGacgccGCGGccGCCGcgcgcgcGCUGGACc -3'
miRNA:   3'- -GACGCUGCa----CGCC--CGGCa------CGAUUUGu -5'
6373 3' -55.9 NC_001847.1 + 66177 0.71 0.638114
Target:  5'- gUGCc-CGcGCGGGCCGcGCUGGACGc -3'
miRNA:   3'- gACGcuGCaCGCCCGGCaCGAUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 65878 0.66 0.86428
Target:  5'- -aGCuGACGUGgGGGCCGcccaUGCgccACGc -3'
miRNA:   3'- gaCG-CUGCACgCCCGGC----ACGauuUGU- -5'
6373 3' -55.9 NC_001847.1 + 64469 0.66 0.879101
Target:  5'- -gGCGGCGcgGgGGGCCGaaGCaggGAGCAc -3'
miRNA:   3'- gaCGCUGCa-CgCCCGGCa-CGa--UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 63428 0.7 0.66911
Target:  5'- -cGCGGCGccgGCGGGCCG-GCgcaccgcGCAg -3'
miRNA:   3'- gaCGCUGCa--CGCCCGGCaCGauu----UGU- -5'
6373 3' -55.9 NC_001847.1 + 62522 0.66 0.886176
Target:  5'- gUGCGGCacggGCGGcacguGCCGUGCggccAGCAg -3'
miRNA:   3'- gACGCUGca--CGCC-----CGGCACGau--UUGU- -5'
6373 3' -55.9 NC_001847.1 + 62142 0.69 0.739926
Target:  5'- -aGCGGCGUGCGcauGGCCGcgGCg--GCGu -3'
miRNA:   3'- gaCGCUGCACGC---CCGGCa-CGauuUGU- -5'
6373 3' -55.9 NC_001847.1 + 59559 0.68 0.778485
Target:  5'- -gGCGGCGgggGCGGuGCCG-GCggAAGCu -3'
miRNA:   3'- gaCGCUGCa--CGCC-CGGCaCGa-UUUGu -5'
6373 3' -55.9 NC_001847.1 + 58671 0.7 0.699829
Target:  5'- uUGCGGCGguuggGCGGGCgGcagGCUGGcCAu -3'
miRNA:   3'- gACGCUGCa----CGCCCGgCa--CGAUUuGU- -5'
6373 3' -55.9 NC_001847.1 + 57669 0.66 0.886176
Target:  5'- -gGCaGGCG-GUGGGCacggugGUGCUGGGCGc -3'
miRNA:   3'- gaCG-CUGCaCGCCCGg-----CACGAUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 57044 0.68 0.787813
Target:  5'- -cGCGcCcUGUGGGCCGaggcgGCUAAGCu -3'
miRNA:   3'- gaCGCuGcACGCCCGGCa----CGAUUUGu -5'
6373 3' -55.9 NC_001847.1 + 55500 0.66 0.886176
Target:  5'- -gGCGACGU--GGGCCcUGCUGcuGGCGg -3'
miRNA:   3'- gaCGCUGCAcgCCCGGcACGAU--UUGU- -5'
6373 3' -55.9 NC_001847.1 + 54383 0.67 0.856546
Target:  5'- gCUGCGGCGgGCGG-CCGcggGCgAGGCGg -3'
miRNA:   3'- -GACGCUGCaCGCCcGGCa--CGaUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 53986 0.7 0.66911
Target:  5'- -aGCGGCGcgGCGGGCCaGUcgucGCUuAACAc -3'
miRNA:   3'- gaCGCUGCa-CGCCCGG-CA----CGAuUUGU- -5'
6373 3' -55.9 NC_001847.1 + 53934 0.66 0.86428
Target:  5'- -gGCGACG-GCGGcuCUGUGCgcgAGGCGg -3'
miRNA:   3'- gaCGCUGCaCGCCc-GGCACGa--UUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.