Results 81 - 100 of 134 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6373 | 3' | -55.9 | NC_001847.1 | + | 52119 | 0.66 | 0.899633 |
Target: 5'- -aGCGGCc-GCGGGCCGgcgGCgccccAGCGg -3' miRNA: 3'- gaCGCUGcaCGCCCGGCa--CGau---UUGU- -5' |
|||||||
6373 | 3' | -55.9 | NC_001847.1 | + | 51603 | 0.69 | 0.749734 |
Target: 5'- -gGCGGCGUgaacauucucaGCGGGCCGcuggGCUuccuggugAAGCAg -3' miRNA: 3'- gaCGCUGCA-----------CGCCCGGCa---CGA--------UUUGU- -5' |
|||||||
6373 | 3' | -55.9 | NC_001847.1 | + | 50674 | 0.76 | 0.338344 |
Target: 5'- -gGCGACGUgcccuGCGGGCUGUGCUcgcGCGa -3' miRNA: 3'- gaCGCUGCA-----CGCCCGGCACGAuu-UGU- -5' |
|||||||
6373 | 3' | -55.9 | NC_001847.1 | + | 47860 | 0.66 | 0.8718 |
Target: 5'- -cGCGGCc-GCGGGCCGUcgGCgc-GCAc -3' miRNA: 3'- gaCGCUGcaCGCCCGGCA--CGauuUGU- -5' |
|||||||
6373 | 3' | -55.9 | NC_001847.1 | + | 47635 | 0.78 | 0.267799 |
Target: 5'- -gGCGGCG-GCGGGCaCGUGC-AAGCAg -3' miRNA: 3'- gaCGCUGCaCGCCCG-GCACGaUUUGU- -5' |
|||||||
6373 | 3' | -55.9 | NC_001847.1 | + | 45527 | 0.68 | 0.796997 |
Target: 5'- -gGCGGCGcgGacgGGGCCGUGCcgcGCAg -3' miRNA: 3'- gaCGCUGCa-Cg--CCCGGCACGauuUGU- -5' |
|||||||
6373 | 3' | -55.9 | NC_001847.1 | + | 44302 | 0.68 | 0.787813 |
Target: 5'- -cGCGGCGcgGCGGGCCa-GCgccaGAGCGg -3' miRNA: 3'- gaCGCUGCa-CGCCCGGcaCGa---UUUGU- -5' |
|||||||
6373 | 3' | -55.9 | NC_001847.1 | + | 43597 | 0.67 | 0.848604 |
Target: 5'- -aGCGugGcGCugGGGCCgGUGCUGGccACGg -3' miRNA: 3'- gaCGCugCaCG--CCCGG-CACGAUU--UGU- -5' |
|||||||
6373 | 3' | -55.9 | NC_001847.1 | + | 38757 | 0.78 | 0.287631 |
Target: 5'- -aGCGugGcgGCGGGcCCGUGCUgGAGCAc -3' miRNA: 3'- gaCGCugCa-CGCCC-GGCACGA-UUUGU- -5' |
|||||||
6373 | 3' | -55.9 | NC_001847.1 | + | 37594 | 0.68 | 0.809597 |
Target: 5'- gCUGCGGCGgccGgGGGCCGgcccgcGCUcuuuugcccgacgggGAGCAg -3' miRNA: 3'- -GACGCUGCa--CgCCCGGCa-----CGA---------------UUUGU- -5' |
|||||||
6373 | 3' | -55.9 | NC_001847.1 | + | 36445 | 0.66 | 0.8718 |
Target: 5'- -aGCGGCGcgcgcgGCGcGGCUGUG-UGAGCGg -3' miRNA: 3'- gaCGCUGCa-----CGC-CCGGCACgAUUUGU- -5' |
|||||||
6373 | 3' | -55.9 | NC_001847.1 | + | 36001 | 0.67 | 0.823601 |
Target: 5'- gCUGCaGGCGgccGCGGGCgugGUGCUGGGg- -3' miRNA: 3'- -GACG-CUGCa--CGCCCGg--CACGAUUUgu -5' |
|||||||
6373 | 3' | -55.9 | NC_001847.1 | + | 34174 | 0.69 | 0.709964 |
Target: 5'- gCUGaGGCGcUGCGGGCCGgggGCgc-GCAc -3' miRNA: 3'- -GACgCUGC-ACGCCCGGCa--CGauuUGU- -5' |
|||||||
6373 | 3' | -55.9 | NC_001847.1 | + | 33708 | 0.68 | 0.796997 |
Target: 5'- -cGCGGCGgcGCGuGGCCGaGCUGGGgGa -3' miRNA: 3'- gaCGCUGCa-CGC-CCGGCaCGAUUUgU- -5' |
|||||||
6373 | 3' | -55.9 | NC_001847.1 | + | 32765 | 0.67 | 0.832124 |
Target: 5'- -gGCGGCGcuucGCGacGGCCGgccGCUGGACGc -3' miRNA: 3'- gaCGCUGCa---CGC--CCGGCa--CGAUUUGU- -5' |
|||||||
6373 | 3' | -55.9 | NC_001847.1 | + | 31963 | 0.67 | 0.856546 |
Target: 5'- -cGCGGCGgcgGCGGGCCccG-UGGACGc -3' miRNA: 3'- gaCGCUGCa--CGCCCGGcaCgAUUUGU- -5' |
|||||||
6373 | 3' | -55.9 | NC_001847.1 | + | 31307 | 0.66 | 0.879101 |
Target: 5'- gCUGCGGCGcgccGCGGGCgGcgGCcuggugGAGCGc -3' miRNA: 3'- -GACGCUGCa---CGCCCGgCa-CGa-----UUUGU- -5' |
|||||||
6373 | 3' | -55.9 | NC_001847.1 | + | 30754 | 0.68 | 0.787813 |
Target: 5'- -aGCGGCGcgcugGCGcGcGCCGUGCUGGccucGCGg -3' miRNA: 3'- gaCGCUGCa----CGC-C-CGGCACGAUU----UGU- -5' |
|||||||
6373 | 3' | -55.9 | NC_001847.1 | + | 30141 | 0.69 | 0.720031 |
Target: 5'- -cGCGACGcGCGGcgcGCCGUGCg----- -3' miRNA: 3'- gaCGCUGCaCGCC---CGGCACGauuugu -5' |
|||||||
6373 | 3' | -55.9 | NC_001847.1 | + | 29209 | 0.66 | 0.879101 |
Target: 5'- gCUGCccGACG-GCGGGCUGgaGC-AGACGa -3' miRNA: 3'- -GACG--CUGCaCGCCCGGCa-CGaUUUGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home