miRNA display CGI


Results 21 - 40 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6373 3' -55.9 NC_001847.1 + 26030 0.69 0.720031
Target:  5'- -gGCGGCagcaaaagGUGCGGGCCagGUGCUcgcucggcAGGCAa -3'
miRNA:   3'- gaCGCUG--------CACGCCCGG--CACGA--------UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 58671 0.7 0.699829
Target:  5'- uUGCGGCGguuggGCGGGCgGcagGCUGGcCAu -3'
miRNA:   3'- gACGCUGCa----CGCCCGgCa--CGAUUuGU- -5'
6373 3' -55.9 NC_001847.1 + 81054 0.71 0.627761
Target:  5'- -gGCGACGUgggcGUGGGCgGggccugGCUGGACGg -3'
miRNA:   3'- gaCGCUGCA----CGCCCGgCa-----CGAUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 27755 0.76 0.378373
Target:  5'- uUGCGGCG-GgGGGCUGUGCgGGGCGu -3'
miRNA:   3'- gACGCUGCaCgCCCGGCACGaUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 133567 0.68 0.787813
Target:  5'- -aGCGGCGcgcugGCGcGcGCCGUGCUGGccucGCGg -3'
miRNA:   3'- gaCGCUGCa----CGC-C-CGGCACGAUU----UGU- -5'
6373 3' -55.9 NC_001847.1 + 77211 0.69 0.749734
Target:  5'- -cGCGACGgagccGCGGGCCGccggGCccGGACu -3'
miRNA:   3'- gaCGCUGCa----CGCCCGGCa---CGa-UUUGu -5'
6373 3' -55.9 NC_001847.1 + 105822 0.7 0.688613
Target:  5'- -cGCGcuccaccGCGUcGCGGGCCGcGCcGAGCAg -3'
miRNA:   3'- gaCGC-------UGCA-CGCCCGGCaCGaUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 28295 0.76 0.370117
Target:  5'- -cGCGGCGUGCGuGGgUGUGUUAGGCc -3'
miRNA:   3'- gaCGCUGCACGC-CCgGCACGAUUUGu -5'
6373 3' -55.9 NC_001847.1 + 51603 0.69 0.749734
Target:  5'- -gGCGGCGUgaacauucucaGCGGGCCGcuggGCUuccuggugAAGCAg -3'
miRNA:   3'- gaCGCUGCA-----------CGCCCGGCa---CGA--------UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 50674 0.76 0.338344
Target:  5'- -gGCGACGUgcccuGCGGGCUGUGCUcgcGCGa -3'
miRNA:   3'- gaCGCUGCA-----CGCCCGGCACGAuu-UGU- -5'
6373 3' -55.9 NC_001847.1 + 16056 0.7 0.689635
Target:  5'- -cGCGGCGgccGCGGcGCCucUGCUGGGCGc -3'
miRNA:   3'- gaCGCUGCa--CGCC-CGGc-ACGAUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 78983 0.69 0.720031
Target:  5'- -gGgGGCGUGCucGGGCgGcUGCUGAGCc -3'
miRNA:   3'- gaCgCUGCACG--CCCGgC-ACGAUUUGu -5'
6373 3' -55.9 NC_001847.1 + 9007 0.71 0.648462
Target:  5'- uUGCcauCGUGCGcGGCCGcgacccccUGCUAGACGc -3'
miRNA:   3'- gACGcu-GCACGC-CCGGC--------ACGAUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 102581 0.71 0.627761
Target:  5'- -aGCGGCGgGCGGcGCCauccUGCUGGGCGa -3'
miRNA:   3'- gaCGCUGCaCGCC-CGGc---ACGAUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 125326 0.73 0.496126
Target:  5'- -gGCGGCG-GCGGGCCGggccggucUGCcgGGACAa -3'
miRNA:   3'- gaCGCUGCaCGCCCGGC--------ACGa-UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 116444 0.74 0.44869
Target:  5'- -cGCGGCGcuggcggugacGCGGGCCGUGCU--GCGg -3'
miRNA:   3'- gaCGCUGCa----------CGCCCGGCACGAuuUGU- -5'
6373 3' -55.9 NC_001847.1 + 68793 0.68 0.796997
Target:  5'- -cGCGGCGgccgcgcgaGCGGGCCGacggGggGAACAa -3'
miRNA:   3'- gaCGCUGCa--------CGCCCGGCa---CgaUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 8125 0.68 0.796997
Target:  5'- -cGCGGgGccccagggGCGGGCgGUGCUGcGCGa -3'
miRNA:   3'- gaCGCUgCa-------CGCCCGgCACGAUuUGU- -5'
6373 3' -55.9 NC_001847.1 + 108034 0.68 0.778485
Target:  5'- -cGCGGCGgccgGCGGGgCGcGCgcGGCAa -3'
miRNA:   3'- gaCGCUGCa---CGCCCgGCaCGauUUGU- -5'
6373 3' -55.9 NC_001847.1 + 121414 0.69 0.759436
Target:  5'- gCUGCGugGaggGCGGaGCCGU--UGAGCGg -3'
miRNA:   3'- -GACGCugCa--CGCC-CGGCAcgAUUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.