miRNA display CGI


Results 41 - 60 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6373 3' -55.9 NC_001847.1 + 72583 0.68 0.805133
Target:  5'- -cGCGAUGcGCGGGCUGggccaaaacgcgcUGCUGGccGCAc -3'
miRNA:   3'- gaCGCUGCaCGCCCGGC-------------ACGAUU--UGU- -5'
6373 3' -55.9 NC_001847.1 + 78983 0.69 0.720031
Target:  5'- -gGgGGCGUGCucGGGCgGcUGCUGAGCc -3'
miRNA:   3'- gaCgCUGCACG--CCCGgC-ACGAUUUGu -5'
6373 3' -55.9 NC_001847.1 + 82472 0.72 0.552775
Target:  5'- gUGCGGCGUGCcgugggacgagcccGcGGCCGUGC-GGGCGg -3'
miRNA:   3'- gACGCUGCACG--------------C-CCGGCACGaUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 68793 0.68 0.796997
Target:  5'- -cGCGGCGgccgcgcgaGCGGGCCGacggGggGAACAa -3'
miRNA:   3'- gaCGCUGCa--------CGCCCGGCa---CgaUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 125326 0.73 0.496126
Target:  5'- -gGCGGCG-GCGGGCCGggccggucUGCcgGGACAa -3'
miRNA:   3'- gaCGCUGCaCGCCCGGC--------ACGa-UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 89542 0.66 0.867314
Target:  5'- -aGCGACGggucagauuggcccGCGGGCCGcG-UGAGCAc -3'
miRNA:   3'- gaCGCUGCa-------------CGCCCGGCaCgAUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 81054 0.71 0.627761
Target:  5'- -gGCGACGUgggcGUGGGCgGggccugGCUGGACGg -3'
miRNA:   3'- gaCGCUGCA----CGCCCGgCa-----CGAUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 73780 0.66 0.86428
Target:  5'- -cGCGACGccucgccggUGCGGggcugccuGCCGguggGCUAGGCGc -3'
miRNA:   3'- gaCGCUGC---------ACGCC--------CGGCa---CGAUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 53934 0.66 0.86428
Target:  5'- -gGCGACG-GCGGcuCUGUGCgcgAGGCGg -3'
miRNA:   3'- gaCGCUGCaCGCCc-GGCACGa--UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 43597 0.67 0.848604
Target:  5'- -aGCGugGcGCugGGGCCgGUGCUGGccACGg -3'
miRNA:   3'- gaCGCugCaCG--CCCGG-CACGAUU--UGU- -5'
6373 3' -55.9 NC_001847.1 + 32765 0.67 0.832124
Target:  5'- -gGCGGCGcuucGCGacGGCCGgccGCUGGACGc -3'
miRNA:   3'- gaCGCUGCa---CGC--CCGGCa--CGAUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 107875 0.67 0.8149
Target:  5'- -cGgGACGgacgGCGGGCCGggaGCgggcGGCAg -3'
miRNA:   3'- gaCgCUGCa---CGCCCGGCa--CGau--UUGU- -5'
6373 3' -55.9 NC_001847.1 + 71442 0.68 0.806029
Target:  5'- -cGCGACGgGCGcGGCUuugaGCUGAGCGu -3'
miRNA:   3'- gaCGCUGCaCGC-CCGGca--CGAUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 8125 0.68 0.796997
Target:  5'- -cGCGGgGccccagggGCGGGCgGUGCUGcGCGa -3'
miRNA:   3'- gaCGCUgCa-------CGCCCGgCACGAUuUGU- -5'
6373 3' -55.9 NC_001847.1 + 28088 0.68 0.787813
Target:  5'- gCUGUGGCGccUGCccgGGGCCGcGCgcGACAc -3'
miRNA:   3'- -GACGCUGC--ACG---CCCGGCaCGauUUGU- -5'
6373 3' -55.9 NC_001847.1 + 121414 0.69 0.759436
Target:  5'- gCUGCGugGaggGCGGaGCCGU--UGAGCGg -3'
miRNA:   3'- -GACGCugCa--CGCC-CGGCAcgAUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 79370 0.69 0.748758
Target:  5'- aUGCGAagcUGUGCGGcagcgcgcggcucGCCGUgggGCUGAGCGc -3'
miRNA:   3'- gACGCU---GCACGCC-------------CGGCA---CGAUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 34174 0.69 0.709964
Target:  5'- gCUGaGGCGcUGCGGGCCGgggGCgc-GCAc -3'
miRNA:   3'- -GACgCUGC-ACGCCCGGCa--CGauuUGU- -5'
6373 3' -55.9 NC_001847.1 + 105822 0.7 0.688613
Target:  5'- -cGCGcuccaccGCGUcGCGGGCCGcGCcGAGCAg -3'
miRNA:   3'- gaCGC-------UGCA-CGCCCGGCaCGaUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 66177 0.71 0.638114
Target:  5'- gUGCc-CGcGCGGGCCGcGCUGGACGc -3'
miRNA:   3'- gACGcuGCaCGCCCGGCaCGAUUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.