miRNA display CGI


Results 61 - 80 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6373 3' -55.9 NC_001847.1 + 32765 0.67 0.832124
Target:  5'- -gGCGGCGcuucGCGacGGCCGgccGCUGGACGc -3'
miRNA:   3'- gaCGCUGCa---CGC--CCGGCa--CGAUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 77574 0.67 0.848604
Target:  5'- -cGCGGCcGcGCGGGCCGaGCUc-GCAc -3'
miRNA:   3'- gaCGCUG-CaCGCCCGGCaCGAuuUGU- -5'
6373 3' -55.9 NC_001847.1 + 108034 0.68 0.778485
Target:  5'- -cGCGGCGgccgGCGGGgCGcGCgcGGCAa -3'
miRNA:   3'- gaCGCUGCa---CGCCCgGCaCGauUUGU- -5'
6373 3' -55.9 NC_001847.1 + 28088 0.68 0.787813
Target:  5'- gCUGUGGCGccUGCccgGGGCCGcGCgcGACAc -3'
miRNA:   3'- -GACGCUGC--ACG---CCCGGCaCGauUUGU- -5'
6373 3' -55.9 NC_001847.1 + 133567 0.68 0.787813
Target:  5'- -aGCGGCGcgcugGCGcGcGCCGUGCUGGccucGCGg -3'
miRNA:   3'- gaCGCUGCa----CGC-C-CGGCACGAUU----UGU- -5'
6373 3' -55.9 NC_001847.1 + 8125 0.68 0.796997
Target:  5'- -cGCGGgGccccagggGCGGGCgGUGCUGcGCGa -3'
miRNA:   3'- gaCGCUgCa-------CGCCCGgCACGAUuUGU- -5'
6373 3' -55.9 NC_001847.1 + 68793 0.68 0.796997
Target:  5'- -cGCGGCGgccgcgcgaGCGGGCCGacggGggGAACAa -3'
miRNA:   3'- gaCGCUGCa--------CGCCCGGCa---CgaUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 72583 0.68 0.805133
Target:  5'- -cGCGAUGcGCGGGCUGggccaaaacgcgcUGCUGGccGCAc -3'
miRNA:   3'- gaCGCUGCaCGCCCGGC-------------ACGAUU--UGU- -5'
6373 3' -55.9 NC_001847.1 + 71442 0.68 0.806029
Target:  5'- -cGCGACGgGCGcGGCUuugaGCUGAGCGu -3'
miRNA:   3'- gaCGCUGCaCGC-CCGGca--CGAUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 37594 0.68 0.809597
Target:  5'- gCUGCGGCGgccGgGGGCCGgcccgcGCUcuuuugcccgacgggGAGCAg -3'
miRNA:   3'- -GACGCUGCa--CgCCCGGCa-----CGA---------------UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 26994 0.66 0.879101
Target:  5'- uCUGCGGCGgcGCGGuuGCCGUaCUcgGCGg -3'
miRNA:   3'- -GACGCUGCa-CGCC--CGGCAcGAuuUGU- -5'
6373 3' -55.9 NC_001847.1 + 112555 0.67 0.8149
Target:  5'- -cGCGACcggGCGGGCCcUGCcccgGGGCGc -3'
miRNA:   3'- gaCGCUGca-CGCCCGGcACGa---UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 65878 0.66 0.86428
Target:  5'- -aGCuGACGUGgGGGCCGcccaUGCgccACGc -3'
miRNA:   3'- gaCG-CUGCACgCCCGGC----ACGauuUGU- -5'
6373 3' -55.9 NC_001847.1 + 123085 0.66 0.8718
Target:  5'- -aGCGACGaUGaCGGGCCc-GCUAG-CAa -3'
miRNA:   3'- gaCGCUGC-AC-GCCCGGcaCGAUUuGU- -5'
6373 3' -55.9 NC_001847.1 + 79261 0.66 0.879101
Target:  5'- -aGcCGGCGU-CGGGCCGcGCggcgAAGCGg -3'
miRNA:   3'- gaC-GCUGCAcGCCCGGCaCGa---UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 25742 0.66 0.886176
Target:  5'- -aGCGGCG-GCGGGCgGcgGCg--GCAc -3'
miRNA:   3'- gaCGCUGCaCGCCCGgCa-CGauuUGU- -5'
6373 3' -55.9 NC_001847.1 + 19766 0.66 0.886176
Target:  5'- -gGCGGgGUGCGGGCuCG-GC---GCAg -3'
miRNA:   3'- gaCGCUgCACGCCCG-GCaCGauuUGU- -5'
6373 3' -55.9 NC_001847.1 + 124976 0.66 0.899633
Target:  5'- -aGcCGGCGcaGCGGGCCGgccUGCUcGGGCGa -3'
miRNA:   3'- gaC-GCUGCa-CGCCCGGC---ACGA-UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 10127 0.66 0.899633
Target:  5'- -cGCGGCGaGCGGGcCCG-GCcguAGCGc -3'
miRNA:   3'- gaCGCUGCaCGCCC-GGCaCGau-UUGU- -5'
6373 3' -55.9 NC_001847.1 + 73767 0.68 0.806029
Target:  5'- -gGCGGCGgcGCGGGCCGcuacgaGCgcgGGGCGc -3'
miRNA:   3'- gaCGCUGCa-CGCCCGGCa-----CGa--UUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.