miRNA display CGI


Results 81 - 100 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6373 3' -55.9 NC_001847.1 + 13164 0.74 0.44869
Target:  5'- gCUGCgccgaGACGUGCGGGUCG-GCgaGAACAa -3'
miRNA:   3'- -GACG-----CUGCACGCCCGGCaCGa-UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 22951 0.68 0.806029
Target:  5'- gCUGgGugGgcugggGUGGGCUGgGCUGGGCu -3'
miRNA:   3'- -GACgCugCa-----CGCCCGGCaCGAUUUGu -5'
6373 3' -55.9 NC_001847.1 + 22282 0.66 0.886176
Target:  5'- -cGCGcGCGUGUcGGCCGUGacGAACGc -3'
miRNA:   3'- gaCGC-UGCACGcCCGGCACgaUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 16594 0.74 0.457981
Target:  5'- -gGCGGCGUGgGGuGCCGgcgaucagacGCUGAGCAu -3'
miRNA:   3'- gaCGCUGCACgCC-CGGCa---------CGAUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 62522 0.66 0.886176
Target:  5'- gUGCGGCacggGCGGcacguGCCGUGCggccAGCAg -3'
miRNA:   3'- gACGCUGca--CGCC-----CGGCACGau--UUGU- -5'
6373 3' -55.9 NC_001847.1 + 22513 0.73 0.496126
Target:  5'- -gGCGGCG-GCGGGCCGggccggucUGCcgGGACAa -3'
miRNA:   3'- gaCGCUGCaCGCCCGGC--------ACGa-UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 134164 0.72 0.535643
Target:  5'- -gGUG-CGUGCGGGCCGgcGCaUAGACGc -3'
miRNA:   3'- gaCGCuGCACGCCCGGCa-CG-AUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 86388 0.72 0.555816
Target:  5'- -cGCGGCG-GCGGGCgCGcgGCUGAGuCAu -3'
miRNA:   3'- gaCGCUGCaCGCCCG-GCa-CGAUUU-GU- -5'
6373 3' -55.9 NC_001847.1 + 47635 0.78 0.267799
Target:  5'- -gGCGGCG-GCGGGCaCGUGC-AAGCAg -3'
miRNA:   3'- gaCGCUGCaCGCCCG-GCACGaUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 14159 0.66 0.879101
Target:  5'- -aGCGGCGgccgGgGcGGCCGcGCUAAagGCAc -3'
miRNA:   3'- gaCGCUGCa---CgC-CCGGCaCGAUU--UGU- -5'
6373 3' -55.9 NC_001847.1 + 110222 1.09 0.00253
Target:  5'- aCUGCGACGUGCGGGCCGUGCUAAACAu -3'
miRNA:   3'- -GACGCUGCACGCCCGGCACGAUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 134502 0.67 0.823601
Target:  5'- gUGUa--GUGUGGGCCGUGCggccGCGg -3'
miRNA:   3'- gACGcugCACGCCCGGCACGauu-UGU- -5'
6373 3' -55.9 NC_001847.1 + 9742 0.67 0.8149
Target:  5'- -cGCGACcggGCGGGCCcUGCcccgGGGCGc -3'
miRNA:   3'- gaCGCUGca-CGCCCGGcACGa---UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 96347 0.67 0.823601
Target:  5'- -gGCGGCGgcaaugGCgGGGCCG-GCgguGGCAa -3'
miRNA:   3'- gaCGCUGCa-----CG-CCCGGCaCGau-UUGU- -5'
6373 3' -55.9 NC_001847.1 + 125797 0.67 0.8149
Target:  5'- -aGCGAguCG-GCGGGCCGgcggGCgu-GCAg -3'
miRNA:   3'- gaCGCU--GCaCGCCCGGCa---CGauuUGU- -5'
6373 3' -55.9 NC_001847.1 + 38757 0.78 0.287631
Target:  5'- -aGCGugGcgGCGGGcCCGUGCUgGAGCAc -3'
miRNA:   3'- gaCGCugCa-CGCCC-GGCACGA-UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 114050 0.67 0.8149
Target:  5'- -gGCGugGUGaUGGcGUCGUGCUuuACc -3'
miRNA:   3'- gaCGCugCAC-GCC-CGGCACGAuuUGu -5'
6373 3' -55.9 NC_001847.1 + 102678 0.66 0.86428
Target:  5'- aUGUGAUGaacgcgcugGCGGGCgUGUGCUGcGGCAg -3'
miRNA:   3'- gACGCUGCa--------CGCCCG-GCACGAU-UUGU- -5'
6373 3' -55.9 NC_001847.1 + 102999 0.66 0.86428
Target:  5'- -cGCGGCGUgcGCGGGCgCGgcgGCgcccAGCGc -3'
miRNA:   3'- gaCGCUGCA--CGCCCG-GCa--CGau--UUGU- -5'
6373 3' -55.9 NC_001847.1 + 5062 0.67 0.8149
Target:  5'- -cGgGACGgacgGCGGGCCGggaGCgggcGGCAg -3'
miRNA:   3'- gaCgCUGCa---CGCCCGGCa--CGau--UUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.