miRNA display CGI


Results 101 - 120 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6373 3' -55.9 NC_001847.1 + 62142 0.69 0.739926
Target:  5'- -aGCGGCGUGCGcauGGCCGcgGCg--GCGu -3'
miRNA:   3'- gaCGCUGCACGC---CCGGCa-CGauuUGU- -5'
6373 3' -55.9 NC_001847.1 + 122757 0.69 0.730022
Target:  5'- gCUGCGcauacACGgucCGGGCCGUGCgcuccAGCAg -3'
miRNA:   3'- -GACGC-----UGCac-GCCCGGCACGau---UUGU- -5'
6373 3' -55.9 NC_001847.1 + 74895 0.69 0.709964
Target:  5'- cCUGCGAaGU-CGGcGCCGUGCUAGc-- -3'
miRNA:   3'- -GACGCUgCAcGCC-CGGCACGAUUugu -5'
6373 3' -55.9 NC_001847.1 + 128651 0.7 0.693719
Target:  5'- -gGCGACGccgcuaccuacgaccUGCaGGCCGUGCgGGACu -3'
miRNA:   3'- gaCGCUGC---------------ACGcCCGGCACGaUUUGu -5'
6373 3' -55.9 NC_001847.1 + 3009 0.7 0.688613
Target:  5'- -cGCGcuccaccGCGUcGCGGGCCGcGCcGAGCAg -3'
miRNA:   3'- gaCGC-------UGCA-CGCCCGGCaCGaUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 53986 0.7 0.66911
Target:  5'- -aGCGGCGcgGCGGGCCaGUcgucGCUuAACAc -3'
miRNA:   3'- gaCGCUGCa-CGCCCGG-CA----CGAuUUGU- -5'
6373 3' -55.9 NC_001847.1 + 119526 0.71 0.648462
Target:  5'- -gGCGGCG-GcCGcGGCCGgcagGCUGGGCAa -3'
miRNA:   3'- gaCGCUGCaC-GC-CCGGCa---CGAUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 38757 0.78 0.287631
Target:  5'- -aGCGugGcgGCGGGcCCGUGCUgGAGCAc -3'
miRNA:   3'- gaCGCugCa-CGCCC-GGCACGA-UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 125574 0.69 0.759436
Target:  5'- -cGCGGCc-GCGGGCgGcggGCUGGACGg -3'
miRNA:   3'- gaCGCUGcaCGCCCGgCa--CGAUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 108740 0.69 0.759436
Target:  5'- aCUGCGACGcgacgGCGuuccuGCCGcGCUGGGCGc -3'
miRNA:   3'- -GACGCUGCa----CGCc----CGGCaCGAUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 86388 0.72 0.555816
Target:  5'- -cGCGGCG-GCGGGCgCGcgGCUGAGuCAu -3'
miRNA:   3'- gaCGCUGCaCGCCCG-GCa-CGAUUU-GU- -5'
6373 3' -55.9 NC_001847.1 + 125797 0.67 0.8149
Target:  5'- -aGCGAguCG-GCGGGCCGgcggGCgu-GCAg -3'
miRNA:   3'- gaCGCU--GCaCGCCCGGCa---CGauuUGU- -5'
6373 3' -55.9 NC_001847.1 + 9742 0.67 0.8149
Target:  5'- -cGCGACcggGCGGGCCcUGCcccgGGGCGc -3'
miRNA:   3'- gaCGCUGca-CGCCCGGcACGa---UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 114050 0.67 0.8149
Target:  5'- -gGCGugGUGaUGGcGUCGUGCUuuACc -3'
miRNA:   3'- gaCGCugCAC-GCC-CGGCACGAuuUGu -5'
6373 3' -55.9 NC_001847.1 + 5062 0.67 0.8149
Target:  5'- -cGgGACGgacgGCGGGCCGggaGCgggcGGCAg -3'
miRNA:   3'- gaCgCUGCa---CGCCCGGCa--CGau--UUGU- -5'
6373 3' -55.9 NC_001847.1 + 73767 0.68 0.806029
Target:  5'- -gGCGGCGgcGCGGGCCGcuacgaGCgcgGGGCGc -3'
miRNA:   3'- gaCGCUGCa-CGCCCGGCa-----CGa--UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 13164 0.74 0.44869
Target:  5'- gCUGCgccgaGACGUGCGGGUCG-GCgaGAACAa -3'
miRNA:   3'- -GACG-----CUGCACGCCCGGCaCGa-UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 16594 0.74 0.457981
Target:  5'- -gGCGGCGUGgGGuGCCGgcgaucagacGCUGAGCAu -3'
miRNA:   3'- gaCGCUGCACgCC-CGGCa---------CGAUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 22513 0.73 0.496126
Target:  5'- -gGCGGCG-GCGGGCCGggccggucUGCcgGGACAa -3'
miRNA:   3'- gaCGCUGCaCGCCCGGC--------ACGa-UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 134164 0.72 0.535643
Target:  5'- -gGUG-CGUGCGGGCCGgcGCaUAGACGc -3'
miRNA:   3'- gaCGCuGCACGCCCGGCa-CG-AUUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.