Results 21 - 40 of 134 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6373 | 3' | -55.9 | NC_001847.1 | + | 123468 | 0.67 | 0.848604 |
Target: 5'- -gGCGACGgccgccGCGGGCuCG-GCUGGGg- -3' miRNA: 3'- gaCGCUGCa-----CGCCCG-GCaCGAUUUgu -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 73239 | 0.67 | 0.855761 |
Target: 5'- -gGCGGCG-GCGcgggcgcgcucgaGGCCGUGCgc-GCAc -3' miRNA: 3'- gaCGCUGCaCGC-------------CCGGCACGauuUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 96389 | 0.66 | 0.879101 |
Target: 5'- -gGCGGCGgcaaugGCgGGGCCG-GCggcGGCAa -3' miRNA: 3'- gaCGCUGCa-----CG-CCCGGCaCGau-UUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 2104 | 0.66 | 0.879101 |
Target: 5'- -cGCGGCG-GCGGGCCGcgaucucgGCc-AGCGc -3' miRNA: 3'- gaCGCUGCaCGCCCGGCa-------CGauUUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 22282 | 0.66 | 0.886176 |
Target: 5'- -cGCGcGCGUGUcGGCCGUGacGAACGc -3' miRNA: 3'- gaCGC-UGCACGcCCGGCACgaUUUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 62522 | 0.66 | 0.886176 |
Target: 5'- gUGCGGCacggGCGGcacguGCCGUGCggccAGCAg -3' miRNA: 3'- gACGCUGca--CGCC-----CGGCACGau--UUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 14711 | 0.66 | 0.893022 |
Target: 5'- -cGCGACGcGCGGGCaGgagGC-GAACGc -3' miRNA: 3'- gaCGCUGCaCGCCCGgCa--CGaUUUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 22163 | 0.66 | 0.899633 |
Target: 5'- -aGcCGGCGcaGCGGGCCGgccUGCUcGGGCGa -3' miRNA: 3'- gaC-GCUGCa-CGCCCGGC---ACGA-UUUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 52119 | 0.66 | 0.899633 |
Target: 5'- -aGCGGCc-GCGGGCCGgcgGCgccccAGCGg -3' miRNA: 3'- gaCGCUGcaCGCCCGGCa--CGau---UUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 3157 | 0.66 | 0.899633 |
Target: 5'- -gGCGGCGcgGCGGGCCGccuccaGCgccucgcGGCAg -3' miRNA: 3'- gaCGCUGCa-CGCCCGGCa-----CGau-----UUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 96305 | 0.66 | 0.879101 |
Target: 5'- -gGCGGCGgcaaugGCgGGGCCG-GCggcGGCAa -3' miRNA: 3'- gaCGCUGCa-----CG-CCCGGCaCGau-UUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 31307 | 0.66 | 0.879101 |
Target: 5'- gCUGCGGCGcgccGCGGGCgGcgGCcuggugGAGCGc -3' miRNA: 3'- -GACGCUGCa---CGCCCGgCa-CGa-----UUUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 14343 | 0.67 | 0.856546 |
Target: 5'- -gGCGugGUgGCGGcGCC-UGCgggGAACGc -3' miRNA: 3'- gaCGCugCA-CGCC-CGGcACGa--UUUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 117531 | 0.67 | 0.856546 |
Target: 5'- -gGCGACGa-CGaGGCCGUGCgcAACc -3' miRNA: 3'- gaCGCUGCacGC-CCGGCACGauUUGu -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 86636 | 0.66 | 0.86428 |
Target: 5'- -cGUGugG-GCGGGCCGcGCcgccccgGAGCGc -3' miRNA: 3'- gaCGCugCaCGCCCGGCaCGa------UUUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 102852 | 0.66 | 0.86428 |
Target: 5'- -gGCGGCGUcGCGGGgCCGcGCcacgcGGACGg -3' miRNA: 3'- gaCGCUGCA-CGCCC-GGCaCGa----UUUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 102678 | 0.66 | 0.86428 |
Target: 5'- aUGUGAUGaacgcgcugGCGGGCgUGUGCUGcGGCAg -3' miRNA: 3'- gACGCUGCa--------CGCCCG-GCACGAU-UUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 102999 | 0.66 | 0.86428 |
Target: 5'- -cGCGGCGUgcGCGGGCgCGgcgGCgcccAGCGc -3' miRNA: 3'- gaCGCUGCA--CGCCCG-GCa--CGau--UUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 47860 | 0.66 | 0.8718 |
Target: 5'- -cGCGGCc-GCGGGCCGUcgGCgc-GCAc -3' miRNA: 3'- gaCGCUGcaCGCCCGGCA--CGauuUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 14159 | 0.66 | 0.879101 |
Target: 5'- -aGCGGCGgccgGgGcGGCCGcGCUAAagGCAc -3' miRNA: 3'- gaCGCUGCa---CgC-CCGGCaCGAUU--UGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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