miRNA display CGI


Results 41 - 60 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6373 3' -55.9 NC_001847.1 + 67672 0.66 0.899633
Target:  5'- aCUGCGACGacgccGCGGccGCCGcgcgcgcGCUGGACc -3'
miRNA:   3'- -GACGCUGCa----CGCC--CGGCa------CGAUUUGu -5'
6373 3' -55.9 NC_001847.1 + 47860 0.66 0.8718
Target:  5'- -cGCGGCc-GCGGGCCGUcgGCgc-GCAc -3'
miRNA:   3'- gaCGCUGcaCGCCCGGCA--CGauuUGU- -5'
6373 3' -55.9 NC_001847.1 + 102999 0.66 0.86428
Target:  5'- -cGCGGCGUgcGCGGGCgCGgcgGCgcccAGCGc -3'
miRNA:   3'- gaCGCUGCA--CGCCCG-GCa--CGau--UUGU- -5'
6373 3' -55.9 NC_001847.1 + 125797 0.67 0.8149
Target:  5'- -aGCGAguCG-GCGGGCCGgcggGCgu-GCAg -3'
miRNA:   3'- gaCGCU--GCaCGCCCGGCa---CGauuUGU- -5'
6373 3' -55.9 NC_001847.1 + 96347 0.67 0.823601
Target:  5'- -gGCGGCGgcaaugGCgGGGCCG-GCgguGGCAa -3'
miRNA:   3'- gaCGCUGCa-----CG-CCCGGCaCGau-UUGU- -5'
6373 3' -55.9 NC_001847.1 + 134502 0.67 0.823601
Target:  5'- gUGUa--GUGUGGGCCGUGCggccGCGg -3'
miRNA:   3'- gACGcugCACGCCCGGCACGauu-UGU- -5'
6373 3' -55.9 NC_001847.1 + 125506 0.67 0.840461
Target:  5'- gCUGCucgaGCG-GCGGGCCG-GCgcGGCGg -3'
miRNA:   3'- -GACGc---UGCaCGCCCGGCaCGauUUGU- -5'
6373 3' -55.9 NC_001847.1 + 103033 0.67 0.840461
Target:  5'- -gGCGGCGgGCGGGCCGcaGCc--GCGu -3'
miRNA:   3'- gaCGCUGCaCGCCCGGCa-CGauuUGU- -5'
6373 3' -55.9 NC_001847.1 + 123468 0.67 0.848604
Target:  5'- -gGCGACGgccgccGCGGGCuCG-GCUGGGg- -3'
miRNA:   3'- gaCGCUGCa-----CGCCCG-GCaCGAUUUgu -5'
6373 3' -55.9 NC_001847.1 + 73239 0.67 0.855761
Target:  5'- -gGCGGCG-GCGcgggcgcgcucgaGGCCGUGCgc-GCAc -3'
miRNA:   3'- gaCGCUGCaCGC-------------CCGGCACGauuUGU- -5'
6373 3' -55.9 NC_001847.1 + 14343 0.67 0.856546
Target:  5'- -gGCGugGUgGCGGcGCC-UGCgggGAACGc -3'
miRNA:   3'- gaCGCugCA-CGCC-CGGcACGa--UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 117531 0.67 0.856546
Target:  5'- -gGCGACGa-CGaGGCCGUGCgcAACc -3'
miRNA:   3'- gaCGCUGCacGC-CCGGCACGauUUGu -5'
6373 3' -55.9 NC_001847.1 + 86636 0.66 0.86428
Target:  5'- -cGUGugG-GCGGGCCGcGCcgccccgGAGCGc -3'
miRNA:   3'- gaCGCugCaCGCCCGGCaCGa------UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 102852 0.66 0.86428
Target:  5'- -gGCGGCGUcGCGGGgCCGcGCcacgcGGACGg -3'
miRNA:   3'- gaCGCUGCA-CGCCC-GGCaCGa----UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 102678 0.66 0.86428
Target:  5'- aUGUGAUGaacgcgcugGCGGGCgUGUGCUGcGGCAg -3'
miRNA:   3'- gACGCUGCa--------CGCCCG-GCACGAU-UUGU- -5'
6373 3' -55.9 NC_001847.1 + 116444 0.74 0.44869
Target:  5'- -cGCGGCGcuggcggugacGCGGGCCGUGCU--GCGg -3'
miRNA:   3'- gaCGCUGCa----------CGCCCGGCACGAuuUGU- -5'
6373 3' -55.9 NC_001847.1 + 27755 0.76 0.378373
Target:  5'- uUGCGGCG-GgGGGCUGUGCgGGGCGu -3'
miRNA:   3'- gACGCUGCaCgCCCGGCACGaUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 28295 0.76 0.370117
Target:  5'- -cGCGGCGUGCGuGGgUGUGUUAGGCc -3'
miRNA:   3'- gaCGCUGCACGC-CCgGCACGAUUUGu -5'
6373 3' -55.9 NC_001847.1 + 50674 0.76 0.338344
Target:  5'- -gGCGACGUgcccuGCGGGCUGUGCUcgcGCGa -3'
miRNA:   3'- gaCGCUGCA-----CGCCCGGCACGAuu-UGU- -5'
6373 3' -55.9 NC_001847.1 + 105970 0.66 0.899633
Target:  5'- -gGCGGCGcgGCGGGCCGccuccaGCgccucgcGGCAg -3'
miRNA:   3'- gaCGCUGCa-CGCCCGGCa-----CGau-----UUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.