Results 61 - 80 of 134 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6373 | 3' | -55.9 | NC_001847.1 | + | 58671 | 0.7 | 0.699829 |
Target: 5'- uUGCGGCGguuggGCGGGCgGcagGCUGGcCAu -3' miRNA: 3'- gACGCUGCa----CGCCCGgCa--CGAUUuGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 34174 | 0.69 | 0.709964 |
Target: 5'- gCUGaGGCGcUGCGGGCCGgggGCgc-GCAc -3' miRNA: 3'- -GACgCUGC-ACGCCCGGCa--CGauuUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 100644 | 0.69 | 0.709964 |
Target: 5'- gCUGCGGCGccaGGGCCGcGCUGcugcGGCGg -3' miRNA: 3'- -GACGCUGCacgCCCGGCaCGAU----UUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 26030 | 0.69 | 0.720031 |
Target: 5'- -gGCGGCagcaaaagGUGCGGGCCagGUGCUcgcucggcAGGCAa -3' miRNA: 3'- gaCGCUG--------CACGCCCGG--CACGA--------UUUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 78983 | 0.69 | 0.720031 |
Target: 5'- -gGgGGCGUGCucGGGCgGcUGCUGAGCc -3' miRNA: 3'- gaCgCUGCACG--CCCGgC-ACGAUUUGu -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 30141 | 0.69 | 0.720031 |
Target: 5'- -cGCGACGcGCGGcgcGCCGUGCg----- -3' miRNA: 3'- gaCGCUGCaCGCC---CGGCACGauuugu -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 66177 | 0.71 | 0.638114 |
Target: 5'- gUGCc-CGcGCGGGCCGcGCUGGACGc -3' miRNA: 3'- gACGcuGCaCGCCCGGCaCGAUUUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 18415 | 0.71 | 0.627761 |
Target: 5'- -cGCGGCGUGCaGGGCCuuggccacGUGCgccGCGg -3' miRNA: 3'- gaCGCUGCACG-CCCGG--------CACGauuUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 102581 | 0.71 | 0.627761 |
Target: 5'- -aGCGGCGgGCGGcGCCauccUGCUGGGCGa -3' miRNA: 3'- gaCGCUGCaCGCC-CGGc---ACGAUUUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 105970 | 0.66 | 0.899633 |
Target: 5'- -gGCGGCGcgGCGGGCCGccuccaGCgccucgcGGCAg -3' miRNA: 3'- gaCGCUGCa-CGCCCGGCa-----CGau-----UUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 50674 | 0.76 | 0.338344 |
Target: 5'- -gGCGACGUgcccuGCGGGCUGUGCUcgcGCGa -3' miRNA: 3'- gaCGCUGCA-----CGCCCGGCACGAuu-UGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 28295 | 0.76 | 0.370117 |
Target: 5'- -cGCGGCGUGCGuGGgUGUGUUAGGCc -3' miRNA: 3'- gaCGCUGCACGC-CCgGCACGAUUUGu -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 27755 | 0.76 | 0.378373 |
Target: 5'- uUGCGGCG-GgGGGCUGUGCgGGGCGu -3' miRNA: 3'- gACGCUGCaCgCCCGGCACGaUUUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 116444 | 0.74 | 0.44869 |
Target: 5'- -cGCGGCGcuggcggugacGCGGGCCGUGCU--GCGg -3' miRNA: 3'- gaCGCUGCa----------CGCCCGGCACGAuuUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 81236 | 0.74 | 0.457981 |
Target: 5'- -aGCGGCG-GCGGGCCaG-GCUGGGCc -3' miRNA: 3'- gaCGCUGCaCGCCCGG-CaCGAUUUGu -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 22192 | 0.74 | 0.467374 |
Target: 5'- aUGCG-CGggcGCuGGGCCGUGCUGAAg- -3' miRNA: 3'- gACGCuGCa--CG-CCCGGCACGAUUUgu -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 125326 | 0.73 | 0.496126 |
Target: 5'- -gGCGGCG-GCGGGCCGggccggucUGCcgGGACAa -3' miRNA: 3'- gaCGCUGCaCGCCCGGC--------ACGa-UUUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 82472 | 0.72 | 0.552775 |
Target: 5'- gUGCGGCGUGCcgugggacgagcccGcGGCCGUGC-GGGCGg -3' miRNA: 3'- gACGCUGCACG--------------C-CCGGCACGaUUUGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 29073 | 0.71 | 0.596755 |
Target: 5'- gCUGCGugGcggugGCGGGCggCGUGCUGuuUAa -3' miRNA: 3'- -GACGCugCa----CGCCCG--GCACGAUuuGU- -5' |
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6373 | 3' | -55.9 | NC_001847.1 | + | 81054 | 0.71 | 0.627761 |
Target: 5'- -gGCGACGUgggcGUGGGCgGggccugGCUGGACGg -3' miRNA: 3'- gaCGCUGCA----CGCCCGgCa-----CGAUUUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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