Results 81 - 100 of 134 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6373 | 3' | -55.9 | NC_001847.1 | + | 82472 | 0.72 | 0.552775 |
Target: 5'- gUGCGGCGUGCcgugggacgagcccGcGGCCGUGC-GGGCGg -3' miRNA: 3'- gACGCUGCACG--------------C-CCGGCACGaUUUGU- -5' |
|||||||
6373 | 3' | -55.9 | NC_001847.1 | + | 125326 | 0.73 | 0.496126 |
Target: 5'- -gGCGGCG-GCGGGCCGggccggucUGCcgGGACAa -3' miRNA: 3'- gaCGCUGCaCGCCCGGC--------ACGa-UUUGU- -5' |
|||||||
6373 | 3' | -55.9 | NC_001847.1 | + | 22192 | 0.74 | 0.467374 |
Target: 5'- aUGCG-CGggcGCuGGGCCGUGCUGAAg- -3' miRNA: 3'- gACGCuGCa--CG-CCCGGCACGAUUUgu -5' |
|||||||
6373 | 3' | -55.9 | NC_001847.1 | + | 81236 | 0.74 | 0.457981 |
Target: 5'- -aGCGGCG-GCGGGCCaG-GCUGGGCc -3' miRNA: 3'- gaCGCUGCaCGCCCGG-CaCGAUUUGu -5' |
|||||||
6373 | 3' | -55.9 | NC_001847.1 | + | 116444 | 0.74 | 0.44869 |
Target: 5'- -cGCGGCGcuggcggugacGCGGGCCGUGCU--GCGg -3' miRNA: 3'- gaCGCUGCa----------CGCCCGGCACGAuuUGU- -5' |
|||||||
6373 | 3' | -55.9 | NC_001847.1 | + | 27755 | 0.76 | 0.378373 |
Target: 5'- uUGCGGCG-GgGGGCUGUGCgGGGCGu -3' miRNA: 3'- gACGCUGCaCgCCCGGCACGaUUUGU- -5' |
|||||||
6373 | 3' | -55.9 | NC_001847.1 | + | 28295 | 0.76 | 0.370117 |
Target: 5'- -cGCGGCGUGCGuGGgUGUGUUAGGCc -3' miRNA: 3'- gaCGCUGCACGC-CCgGCACGAUUUGu -5' |
|||||||
6373 | 3' | -55.9 | NC_001847.1 | + | 50674 | 0.76 | 0.338344 |
Target: 5'- -gGCGACGUgcccuGCGGGCUGUGCUcgcGCGa -3' miRNA: 3'- gaCGCUGCA-----CGCCCGGCACGAuu-UGU- -5' |
|||||||
6373 | 3' | -55.9 | NC_001847.1 | + | 81054 | 0.71 | 0.627761 |
Target: 5'- -gGCGACGUgggcGUGGGCgGggccugGCUGGACGg -3' miRNA: 3'- gaCGCUGCA----CGCCCGgCa-----CGAUUUGU- -5' |
|||||||
6373 | 3' | -55.9 | NC_001847.1 | + | 102581 | 0.71 | 0.627761 |
Target: 5'- -aGCGGCGgGCGGcGCCauccUGCUGGGCGa -3' miRNA: 3'- gaCGCUGCaCGCC-CGGc---ACGAUUUGU- -5' |
|||||||
6373 | 3' | -55.9 | NC_001847.1 | + | 18415 | 0.71 | 0.627761 |
Target: 5'- -cGCGGCGUGCaGGGCCuuggccacGUGCgccGCGg -3' miRNA: 3'- gaCGCUGCACG-CCCGG--------CACGauuUGU- -5' |
|||||||
6373 | 3' | -55.9 | NC_001847.1 | + | 100644 | 0.69 | 0.709964 |
Target: 5'- gCUGCGGCGccaGGGCCGcGCUGcugcGGCGg -3' miRNA: 3'- -GACGCUGCacgCCCGGCaCGAU----UUGU- -5' |
|||||||
6373 | 3' | -55.9 | NC_001847.1 | + | 34174 | 0.69 | 0.709964 |
Target: 5'- gCUGaGGCGcUGCGGGCCGgggGCgc-GCAc -3' miRNA: 3'- -GACgCUGC-ACGCCCGGCa--CGauuUGU- -5' |
|||||||
6373 | 3' | -55.9 | NC_001847.1 | + | 58671 | 0.7 | 0.699829 |
Target: 5'- uUGCGGCGguuggGCGGGCgGcagGCUGGcCAu -3' miRNA: 3'- gACGCUGCa----CGCCCGgCa--CGAUUuGU- -5' |
|||||||
6373 | 3' | -55.9 | NC_001847.1 | + | 16056 | 0.7 | 0.689635 |
Target: 5'- -cGCGGCGgccGCGGcGCCucUGCUGGGCGc -3' miRNA: 3'- gaCGCUGCa--CGCC-CGGc-ACGAUUUGU- -5' |
|||||||
6373 | 3' | -55.9 | NC_001847.1 | + | 105822 | 0.7 | 0.688613 |
Target: 5'- -cGCGcuccaccGCGUcGCGGGCCGcGCcGAGCAg -3' miRNA: 3'- gaCGC-------UGCA-CGCCCGGCaCGaUUUGU- -5' |
|||||||
6373 | 3' | -55.9 | NC_001847.1 | + | 70463 | 0.7 | 0.678366 |
Target: 5'- aCUGCGACacgcGCGGGCgcccgguggauggCGUGCUGGugAc -3' miRNA: 3'- -GACGCUGca--CGCCCG-------------GCACGAUUugU- -5' |
|||||||
6373 | 3' | -55.9 | NC_001847.1 | + | 63428 | 0.7 | 0.66911 |
Target: 5'- -cGCGGCGccgGCGGGCCG-GCgcaccgcGCAg -3' miRNA: 3'- gaCGCUGCa--CGCCCGGCaCGauu----UGU- -5' |
|||||||
6373 | 3' | -55.9 | NC_001847.1 | + | 9007 | 0.71 | 0.648462 |
Target: 5'- uUGCcauCGUGCGcGGCCGcgacccccUGCUAGACGc -3' miRNA: 3'- gACGcu-GCACGC-CCGGC--------ACGAUUUGU- -5' |
|||||||
6373 | 3' | -55.9 | NC_001847.1 | + | 66177 | 0.71 | 0.638114 |
Target: 5'- gUGCc-CGcGCGGGCCGcGCUGGACGc -3' miRNA: 3'- gACGcuGCaCGCCCGGCaCGAUUUGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home