miRNA display CGI


Results 21 - 40 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6373 3' -55.9 NC_001847.1 + 29209 0.66 0.879101
Target:  5'- gCUGCccGACG-GCGGGCUGgaGC-AGACGa -3'
miRNA:   3'- -GACG--CUGCaCGCCCGGCa-CGaUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 104917 0.66 0.879101
Target:  5'- -cGCGGCG-GCGGGCCGcgaucucgGCc-AGCGc -3'
miRNA:   3'- gaCGCUGCaCGCCCGGCa-------CGauUUGU- -5'
6373 3' -55.9 NC_001847.1 + 64469 0.66 0.879101
Target:  5'- -gGCGGCGcgGgGGGCCGaaGCaggGAGCAc -3'
miRNA:   3'- gaCGCUGCa-CgCCCGGCa-CGa--UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 26994 0.66 0.879101
Target:  5'- uCUGCGGCGgcGCGGuuGCCGUaCUcgGCGg -3'
miRNA:   3'- -GACGCUGCa-CGCC--CGGCAcGAuuUGU- -5'
6373 3' -55.9 NC_001847.1 + 96389 0.66 0.879101
Target:  5'- -gGCGGCGgcaaugGCgGGGCCG-GCggcGGCAa -3'
miRNA:   3'- gaCGCUGCa-----CG-CCCGGCaCGau-UUGU- -5'
6373 3' -55.9 NC_001847.1 + 96305 0.66 0.879101
Target:  5'- -gGCGGCGgcaaugGCgGGGCCG-GCggcGGCAa -3'
miRNA:   3'- gaCGCUGCa-----CG-CCCGGCaCGau-UUGU- -5'
6373 3' -55.9 NC_001847.1 + 31307 0.66 0.879101
Target:  5'- gCUGCGGCGcgccGCGGGCgGcgGCcuggugGAGCGc -3'
miRNA:   3'- -GACGCUGCa---CGCCCGgCa-CGa-----UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 2104 0.66 0.879101
Target:  5'- -cGCGGCG-GCGGGCCGcgaucucgGCc-AGCGc -3'
miRNA:   3'- gaCGCUGCaCGCCCGGCa-------CGauUUGU- -5'
6373 3' -55.9 NC_001847.1 + 14159 0.66 0.879101
Target:  5'- -aGCGGCGgccgGgGcGGCCGcGCUAAagGCAc -3'
miRNA:   3'- gaCGCUGCa---CgC-CCGGCaCGAUU--UGU- -5'
6373 3' -55.9 NC_001847.1 + 36445 0.66 0.8718
Target:  5'- -aGCGGCGcgcgcgGCGcGGCUGUG-UGAGCGg -3'
miRNA:   3'- gaCGCUGCa-----CGC-CCGGCACgAUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 47860 0.66 0.8718
Target:  5'- -cGCGGCc-GCGGGCCGUcgGCgc-GCAc -3'
miRNA:   3'- gaCGCUGcaCGCCCGGCA--CGauuUGU- -5'
6373 3' -55.9 NC_001847.1 + 10843 0.66 0.8718
Target:  5'- -cGCGACGgcggcGCGuGGCCGagGCgcGGCGg -3'
miRNA:   3'- gaCGCUGCa----CGC-CCGGCa-CGauUUGU- -5'
6373 3' -55.9 NC_001847.1 + 123085 0.66 0.8718
Target:  5'- -aGCGACGaUGaCGGGCCc-GCUAG-CAa -3'
miRNA:   3'- gaCGCUGC-AC-GCCCGGcaCGAUUuGU- -5'
6373 3' -55.9 NC_001847.1 + 89542 0.66 0.867314
Target:  5'- -aGCGACGggucagauuggcccGCGGGCCGcG-UGAGCAc -3'
miRNA:   3'- gaCGCUGCa-------------CGCCCGGCaCgAUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 65878 0.66 0.86428
Target:  5'- -aGCuGACGUGgGGGCCGcccaUGCgccACGc -3'
miRNA:   3'- gaCG-CUGCACgCCCGGC----ACGauuUGU- -5'
6373 3' -55.9 NC_001847.1 + 73780 0.66 0.86428
Target:  5'- -cGCGACGccucgccggUGCGGggcugccuGCCGguggGCUAGGCGc -3'
miRNA:   3'- gaCGCUGC---------ACGCC--------CGGCa---CGAUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 86636 0.66 0.86428
Target:  5'- -cGUGugG-GCGGGCCGcGCcgccccgGAGCGc -3'
miRNA:   3'- gaCGCugCaCGCCCGGCaCGa------UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 102999 0.66 0.86428
Target:  5'- -cGCGGCGUgcGCGGGCgCGgcgGCgcccAGCGc -3'
miRNA:   3'- gaCGCUGCA--CGCCCG-GCa--CGau--UUGU- -5'
6373 3' -55.9 NC_001847.1 + 102852 0.66 0.86428
Target:  5'- -gGCGGCGUcGCGGGgCCGcGCcacgcGGACGg -3'
miRNA:   3'- gaCGCUGCA-CGCCC-GGCaCGa----UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 102678 0.66 0.86428
Target:  5'- aUGUGAUGaacgcgcugGCGGGCgUGUGCUGcGGCAg -3'
miRNA:   3'- gACGCUGCa--------CGCCCG-GCACGAU-UUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.