miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6373 5' -61 NC_001847.1 + 86364 0.66 0.714699
Target:  5'- -gCGCCCGcaGACGAGgCGGCGgGCc- -3'
miRNA:   3'- gaGCGGGCc-CUGCUCaGCUGCgCGac -5'
6373 5' -61 NC_001847.1 + 53919 0.66 0.714699
Target:  5'- -cCGCCCGGaGGCGAcggCGACG-GCg- -3'
miRNA:   3'- gaGCGGGCC-CUGCUca-GCUGCgCGac -5'
6373 5' -61 NC_001847.1 + 44943 0.66 0.714699
Target:  5'- -gCGCUCGGGcUGGGcgaCGGCGCGCc- -3'
miRNA:   3'- gaGCGGGCCCuGCUCa--GCUGCGCGac -5'
6373 5' -61 NC_001847.1 + 97777 0.66 0.705068
Target:  5'- -cCGCCgGGGAUGA---GACGCGCc- -3'
miRNA:   3'- gaGCGGgCCCUGCUcagCUGCGCGac -5'
6373 5' -61 NC_001847.1 + 112498 0.66 0.705068
Target:  5'- -cCGCCCGGGGCaAGcCcgcccuccccgGACGCGCc- -3'
miRNA:   3'- gaGCGGGCCCUGcUCaG-----------CUGCGCGac -5'
6373 5' -61 NC_001847.1 + 96902 0.66 0.705068
Target:  5'- gCUCGCgCGGGACuGG-CGGcCGCGUa- -3'
miRNA:   3'- -GAGCGgGCCCUGcUCaGCU-GCGCGac -5'
6373 5' -61 NC_001847.1 + 131651 0.66 0.705068
Target:  5'- gCUCGCgCGGcucauguGCGAGcucUCGGCGCGCc- -3'
miRNA:   3'- -GAGCGgGCCc------UGCUC---AGCUGCGCGac -5'
6373 5' -61 NC_001847.1 + 73139 0.66 0.705068
Target:  5'- gCUCGCggaCCuGGAgGAGgCGGCGCGCc- -3'
miRNA:   3'- -GAGCG---GGcCCUgCUCaGCUGCGCGac -5'
6373 5' -61 NC_001847.1 + 9685 0.66 0.705068
Target:  5'- -cCGCCCGGGGCaAGcCcgcccuccccgGACGCGCc- -3'
miRNA:   3'- gaGCGGGCCCUGcUCaG-----------CUGCGCGac -5'
6373 5' -61 NC_001847.1 + 66484 0.66 0.704102
Target:  5'- gUCGCCCgcaGGGGCGGGgaggCGGugaaguuUGgGCUGg -3'
miRNA:   3'- gAGCGGG---CCCUGCUCa---GCU-------GCgCGAC- -5'
6373 5' -61 NC_001847.1 + 21194 0.66 0.695381
Target:  5'- -gCGCCCGGcGGCGuAGgagaCGccgccgcgaccGCGCGCUGc -3'
miRNA:   3'- gaGCGGGCC-CUGC-UCa---GC-----------UGCGCGAC- -5'
6373 5' -61 NC_001847.1 + 120498 0.66 0.695381
Target:  5'- -cCGCUCGcaGCGAG-CGGCGCGCg- -3'
miRNA:   3'- gaGCGGGCccUGCUCaGCUGCGCGac -5'
6373 5' -61 NC_001847.1 + 53055 0.66 0.695381
Target:  5'- -gCGCCCuccGGcGACGGcGUCaGACGCGCc- -3'
miRNA:   3'- gaGCGGG---CC-CUGCU-CAG-CUGCGCGac -5'
6373 5' -61 NC_001847.1 + 54016 0.66 0.695381
Target:  5'- -aCGUCCGGuccGACGcG-CGGCGCGCUc -3'
miRNA:   3'- gaGCGGGCC---CUGCuCaGCUGCGCGAc -5'
6373 5' -61 NC_001847.1 + 21956 0.66 0.689544
Target:  5'- gUCGUCCGGGcgcugggccgcgGCGccgguugccgcccgcGGUCGACGaccCGCUGa -3'
miRNA:   3'- gAGCGGGCCC------------UGC---------------UCAGCUGC---GCGAC- -5'
6373 5' -61 NC_001847.1 + 64933 0.66 0.689544
Target:  5'- -aCGCCggCGGGGCGGGuggccgcuuuugacaUcaaCGACGUGCUGg -3'
miRNA:   3'- gaGCGG--GCCCUGCUC---------------A---GCUGCGCGAC- -5'
6373 5' -61 NC_001847.1 + 12360 0.66 0.685644
Target:  5'- cCUgGCUCGGGA-GcGUCGGCG-GCUGc -3'
miRNA:   3'- -GAgCGGGCCCUgCuCAGCUGCgCGAC- -5'
6373 5' -61 NC_001847.1 + 60887 0.66 0.685644
Target:  5'- -gCGCCCGGGAaGAGUUG-CGUGa-- -3'
miRNA:   3'- gaGCGGGCCCUgCUCAGCuGCGCgac -5'
6373 5' -61 NC_001847.1 + 34641 0.66 0.685644
Target:  5'- -gCGCgCCGaGGcCGAG-CGGCGCGCc- -3'
miRNA:   3'- gaGCG-GGC-CCuGCUCaGCUGCGCGac -5'
6373 5' -61 NC_001847.1 + 31209 0.66 0.685644
Target:  5'- uCUCGCUgaGGGcGCGGcGUgGGCGCGCg- -3'
miRNA:   3'- -GAGCGGg-CCC-UGCU-CAgCUGCGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.