miRNA display CGI


Results 41 - 60 of 799 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6374 3' -61.3 NC_001847.1 + 109822 0.66 0.672063
Target:  5'- cGGga-GCCGgCCuuUGgGCGCGCccucgUCGGCg -3'
miRNA:   3'- -UCaugCGGUgGG--ACgCGCGCG-----AGCCG- -5'
6374 3' -61.3 NC_001847.1 + 130853 0.66 0.672063
Target:  5'- gAGUACcaaGgCGCCg-GCGCGCGCcucgUGGCc -3'
miRNA:   3'- -UCAUG---CgGUGGgaCGCGCGCGa---GCCG- -5'
6374 3' -61.3 NC_001847.1 + 19846 0.66 0.672063
Target:  5'- --aGCGCCcuugGCCC-GCGCccggggGCGC-CGGCu -3'
miRNA:   3'- ucaUGCGG----UGGGaCGCG------CGCGaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 46499 0.66 0.672063
Target:  5'- --aGCGUgGCCgaGCGUugccagcggcaGCGCUCGGg -3'
miRNA:   3'- ucaUGCGgUGGgaCGCG-----------CGCGAGCCg -5'
6374 3' -61.3 NC_001847.1 + 65689 0.66 0.672063
Target:  5'- ---cCGCCGCCgCcGCGCGCGCgccGCc -3'
miRNA:   3'- ucauGCGGUGG-GaCGCGCGCGagcCG- -5'
6374 3' -61.3 NC_001847.1 + 66943 0.66 0.672063
Target:  5'- cGUGCGCC-CCCuacUGUGCGgGCUuuuUGaGCc -3'
miRNA:   3'- uCAUGCGGuGGG---ACGCGCgCGA---GC-CG- -5'
6374 3' -61.3 NC_001847.1 + 38111 0.66 0.672063
Target:  5'- --gACGCCgcuGCCCgGCGgGUGCgccgGGCa -3'
miRNA:   3'- ucaUGCGG---UGGGaCGCgCGCGag--CCG- -5'
6374 3' -61.3 NC_001847.1 + 29198 0.66 0.662153
Target:  5'- --gGCGCCGCCggGCucccgGUGCuCUCGGCc -3'
miRNA:   3'- ucaUGCGGUGGgaCG-----CGCGcGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 30769 0.66 0.662153
Target:  5'- --cGCGCCgugcugGCCUcGCgGCGCGUcuUCGGCc -3'
miRNA:   3'- ucaUGCGG------UGGGaCG-CGCGCG--AGCCG- -5'
6374 3' -61.3 NC_001847.1 + 59203 0.66 0.662153
Target:  5'- --cACGCCGCgUgugGCG-GCGCaCGGCg -3'
miRNA:   3'- ucaUGCGGUGgGa--CGCgCGCGaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 62762 0.66 0.662153
Target:  5'- --cGCGuccaccaccaCCACCgaG-GUGCGCUCGGCc -3'
miRNA:   3'- ucaUGC----------GGUGGgaCgCGCGCGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 102602 0.66 0.662153
Target:  5'- --aGCGCCGagggCUGCGCGCGCaUCGc- -3'
miRNA:   3'- ucaUGCGGUgg--GACGCGCGCG-AGCcg -5'
6374 3' -61.3 NC_001847.1 + 102688 0.66 0.662153
Target:  5'- --cGCGCUGgCggGCGUGUGCUgCGGCa -3'
miRNA:   3'- ucaUGCGGUgGgaCGCGCGCGA-GCCG- -5'
6374 3' -61.3 NC_001847.1 + 118631 0.66 0.662153
Target:  5'- --gACGUUACCCUcuccaccucagGcCGCGCGCgggaGGCg -3'
miRNA:   3'- ucaUGCGGUGGGA-----------C-GCGCGCGag--CCG- -5'
6374 3' -61.3 NC_001847.1 + 98299 0.66 0.669093
Target:  5'- ---cCGCCGCCgaGCGCaCGUccgccagcccccagUCGGCg -3'
miRNA:   3'- ucauGCGGUGGgaCGCGcGCG--------------AGCCG- -5'
6374 3' -61.3 NC_001847.1 + 55120 0.66 0.670083
Target:  5'- --gACGCCgACCCcccccgcgccaaacGCGCGCGCguagagccccccagCGGCc -3'
miRNA:   3'- ucaUGCGG-UGGGa-------------CGCGCGCGa-------------GCCG- -5'
6374 3' -61.3 NC_001847.1 + 73311 0.66 0.671073
Target:  5'- gAGUACGacaCCACCCUG-GC-CGCcgaccugUUGGCa -3'
miRNA:   3'- -UCAUGC---GGUGGGACgCGcGCG-------AGCCG- -5'
6374 3' -61.3 NC_001847.1 + 40332 0.66 0.671073
Target:  5'- cGgcUGCgGCCCUcggcgaccuugagGUGCGCGUggaggCGGCu -3'
miRNA:   3'- uCauGCGgUGGGA-------------CGCGCGCGa----GCCG- -5'
6374 3' -61.3 NC_001847.1 + 65772 0.66 0.671073
Target:  5'- --aGCGCCACCgccgcaaagaccgCcGCGCGCGC-CaGCa -3'
miRNA:   3'- ucaUGCGGUGG-------------GaCGCGCGCGaGcCG- -5'
6374 3' -61.3 NC_001847.1 + 123448 0.66 0.671073
Target:  5'- gGGUuuGCCgggcuugGCCCgGCgacggccgccGCGgGCUCGGCu -3'
miRNA:   3'- -UCAugCGG-------UGGGaCG----------CGCgCGAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.