miRNA display CGI


Results 101 - 120 of 799 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6374 3' -61.3 NC_001847.1 + 127784 0.66 0.632318
Target:  5'- --gGCGCCGgCa-GCaGCGCGCUgaCGGCu -3'
miRNA:   3'- ucaUGCGGUgGgaCG-CGCGCGA--GCCG- -5'
6374 3' -61.3 NC_001847.1 + 85326 0.66 0.632318
Target:  5'- ---uCGCCgaugGCCCgcugGCGCGCGUUaaagGGCu -3'
miRNA:   3'- ucauGCGG----UGGGa---CGCGCGCGAg---CCG- -5'
6374 3' -61.3 NC_001847.1 + 16679 0.66 0.632318
Target:  5'- --cGCGCaGCCuuggCUGCGCGgGCgagcCGGCa -3'
miRNA:   3'- ucaUGCGgUGG----GACGCGCgCGa---GCCG- -5'
6374 3' -61.3 NC_001847.1 + 3993 0.66 0.632318
Target:  5'- gGGcGCGCgGCCCcgcgggGCGcCGgGCcCGGCg -3'
miRNA:   3'- -UCaUGCGgUGGGa-----CGC-GCgCGaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 125224 0.66 0.632318
Target:  5'- --gGCaGCCGCCUgccGgGCGUaCUCGGCg -3'
miRNA:   3'- ucaUG-CGGUGGGa--CgCGCGcGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 104519 0.66 0.642273
Target:  5'- cGgcCGCCGCgUUUGCG-GCGCUgcgCGGCg -3'
miRNA:   3'- uCauGCGGUG-GGACGCgCGCGA---GCCG- -5'
6374 3' -61.3 NC_001847.1 + 4284 0.66 0.642273
Target:  5'- gAGggGCGCCGCCCc---CGC-CUCGGCu -3'
miRNA:   3'- -UCa-UGCGGUGGGacgcGCGcGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 49352 0.66 0.662153
Target:  5'- --cGCGCCcgcACCCUcGaCGCGCaccGCaUCGGCc -3'
miRNA:   3'- ucaUGCGG---UGGGA-C-GCGCG---CG-AGCCG- -5'
6374 3' -61.3 NC_001847.1 + 35934 0.66 0.662153
Target:  5'- cGGU-CGCgCGCgCUUGCGCcuggGCGCUgcUGGCg -3'
miRNA:   3'- -UCAuGCG-GUG-GGACGCG----CGCGA--GCCG- -5'
6374 3' -61.3 NC_001847.1 + 80341 0.66 0.652221
Target:  5'- --cGCGCuCGCCa-GCGCgGCGCggaaggcgCGGCg -3'
miRNA:   3'- ucaUGCG-GUGGgaCGCG-CGCGa-------GCCG- -5'
6374 3' -61.3 NC_001847.1 + 56728 0.66 0.652221
Target:  5'- cAGcGCGCgCGCCa-GCaGCGCGCccgcagCGGCg -3'
miRNA:   3'- -UCaUGCG-GUGGgaCG-CGCGCGa-----GCCG- -5'
6374 3' -61.3 NC_001847.1 + 129748 0.66 0.652221
Target:  5'- --aGCGCgCGgCCUGUGC-CGC-CGGCc -3'
miRNA:   3'- ucaUGCG-GUgGGACGCGcGCGaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 92145 0.66 0.652221
Target:  5'- cGGcGCGCCcCCCcgGCG-GCGUUccCGGCg -3'
miRNA:   3'- -UCaUGCGGuGGGa-CGCgCGCGA--GCCG- -5'
6374 3' -61.3 NC_001847.1 + 79867 0.66 0.652221
Target:  5'- ---cUGCCGCCCguccgggcccgGCGC-CGUUCGGUc -3'
miRNA:   3'- ucauGCGGUGGGa----------CGCGcGCGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 70691 0.66 0.652221
Target:  5'- --cGCGCCGCC--GCGgGCGg-CGGCg -3'
miRNA:   3'- ucaUGCGGUGGgaCGCgCGCgaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 133747 0.66 0.652221
Target:  5'- ---gUGCCugCCUGUGuUGUcggggcaagucgGCUCGGCg -3'
miRNA:   3'- ucauGCGGugGGACGC-GCG------------CGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 74355 0.66 0.652221
Target:  5'- --gGCGCCACCaaggugggcugCUGCGCcucgugGCGCUgGaGCu -3'
miRNA:   3'- ucaUGCGGUGG-----------GACGCG------CGCGAgC-CG- -5'
6374 3' -61.3 NC_001847.1 + 51607 0.66 0.652221
Target:  5'- cAGUGCuCCACCCcgggGCG-GCGCaCGGa -3'
miRNA:   3'- -UCAUGcGGUGGGa---CGCgCGCGaGCCg -5'
6374 3' -61.3 NC_001847.1 + 34503 0.66 0.652221
Target:  5'- --aGCGCgGCCCUG-GCGcCGCagccaGGCg -3'
miRNA:   3'- ucaUGCGgUGGGACgCGC-GCGag---CCG- -5'
6374 3' -61.3 NC_001847.1 + 28983 0.66 0.652221
Target:  5'- cGUACGCCcccauggccuACCCggagGcCG-GCGC-CGGCg -3'
miRNA:   3'- uCAUGCGG----------UGGGa---C-GCgCGCGaGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.