miRNA display CGI


Results 41 - 60 of 799 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6374 3' -61.3 NC_001847.1 + 134048 0.76 0.187966
Target:  5'- --gGCGCCGCCCgcgGcCGCgGCGCcCGGCg -3'
miRNA:   3'- ucaUGCGGUGGGa--C-GCG-CGCGaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 91420 0.76 0.183439
Target:  5'- gAGUGCGCCACCaCgucCGCGCGCagCGcGCg -3'
miRNA:   3'- -UCAUGCGGUGG-Gac-GCGCGCGa-GC-CG- -5'
6374 3' -61.3 NC_001847.1 + 91727 0.76 0.194469
Target:  5'- --gACGCgaggcccagcugcagCGCCCUGCGCGCG-UCGGCc -3'
miRNA:   3'- ucaUGCG---------------GUGGGACGCGCGCgAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 60161 0.76 0.179009
Target:  5'- gGGUGCGCCACgCCcGCGaGCGUgUCGGCc -3'
miRNA:   3'- -UCAUGCGGUG-GGaCGCgCGCG-AGCCG- -5'
6374 3' -61.3 NC_001847.1 + 64395 0.76 0.187966
Target:  5'- --gGCGcCCGCUCUGCGCgGCGCUauUGGCa -3'
miRNA:   3'- ucaUGC-GGUGGGACGCG-CGCGA--GCCG- -5'
6374 3' -61.3 NC_001847.1 + 30496 0.76 0.174673
Target:  5'- --gGCGCgGCCCUcggGCGCGCGCUagacgacagugcCGGCg -3'
miRNA:   3'- ucaUGCGgUGGGA---CGCGCGCGA------------GCCG- -5'
6374 3' -61.3 NC_001847.1 + 116599 0.76 0.179009
Target:  5'- cAGcGCuGCCGCUCUGCgGCGCGgaCGGCg -3'
miRNA:   3'- -UCaUG-CGGUGGGACG-CGCGCgaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 74186 0.76 0.192592
Target:  5'- gGGgACGCCAaccugacguucCUCUGCGCGCGCUaugUGGCu -3'
miRNA:   3'- -UCaUGCGGU-----------GGGACGCGCGCGA---GCCG- -5'
6374 3' -61.3 NC_001847.1 + 130712 0.76 0.166283
Target:  5'- cGUGCGCguuuCCCUGCgGCGCGCgcugccgccgUCGGCg -3'
miRNA:   3'- uCAUGCGgu--GGGACG-CGCGCG----------AGCCG- -5'
6374 3' -61.3 NC_001847.1 + 133188 0.76 0.187966
Target:  5'- --gGCGCCGCCCgGCGaggacgaGCGC-CGGCg -3'
miRNA:   3'- ucaUGCGGUGGGaCGCg------CGCGaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 60715 0.76 0.185238
Target:  5'- cGUGCGCCGCCaCgaccuccacgacggGCGCGgGCgCGGCg -3'
miRNA:   3'- uCAUGCGGUGG-Ga-------------CGCGCgCGaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 85045 0.75 0.217236
Target:  5'- -cUACGCCGCCCgGCGCGgcaGcCUUGGCc -3'
miRNA:   3'- ucAUGCGGUGGGaCGCGCg--C-GAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 87271 0.75 0.217236
Target:  5'- gGGcGCGCgCGCgCUGCGCGCGCcCGcGCa -3'
miRNA:   3'- -UCaUGCG-GUGgGACGCGCGCGaGC-CG- -5'
6374 3' -61.3 NC_001847.1 + 2217 0.75 0.207069
Target:  5'- cAGUAgGCCGCCa-GCGCcgcgGCGCUgGGCg -3'
miRNA:   3'- -UCAUgCGGUGGgaCGCG----CGCGAgCCG- -5'
6374 3' -61.3 NC_001847.1 + 37683 0.75 0.222478
Target:  5'- uAGcGCGCgGCCCUG-GCGCGgCUgCGGCg -3'
miRNA:   3'- -UCaUGCGgUGGGACgCGCGC-GA-GCCG- -5'
6374 3' -61.3 NC_001847.1 + 1520 0.75 0.2121
Target:  5'- cGUAgGCgGCCUcgGCGCGCGCgaaGGCg -3'
miRNA:   3'- uCAUgCGgUGGGa-CGCGCGCGag-CCG- -5'
6374 3' -61.3 NC_001847.1 + 3233 0.75 0.197316
Target:  5'- --cGCGCCGCCC-GCGcCGUGCUcgcCGGCg -3'
miRNA:   3'- ucaUGCGGUGGGaCGC-GCGCGA---GCCG- -5'
6374 3' -61.3 NC_001847.1 + 60724 0.75 0.197316
Target:  5'- uGGUACauuacgucgGCgGCCC-GCGCGCGCgCGGCg -3'
miRNA:   3'- -UCAUG---------CGgUGGGaCGCGCGCGaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 86975 0.75 0.222478
Target:  5'- cAGgACGCCGCCggccgggccgGCGCGCGC-CGGCc -3'
miRNA:   3'- -UCaUGCGGUGGga--------CGCGCGCGaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 30732 0.75 0.207069
Target:  5'- cAGUGCGCCgcgcgcugGCCCgaGCgGCGCGCU-GGCg -3'
miRNA:   3'- -UCAUGCGG--------UGGGa-CG-CGCGCGAgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.