miRNA display CGI


Results 61 - 80 of 799 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6374 3' -61.3 NC_001847.1 + 87271 0.75 0.217236
Target:  5'- gGGcGCGCgCGCgCUGCGCGCGCcCGcGCa -3'
miRNA:   3'- -UCaUGCG-GUGgGACGCGCGCGaGC-CG- -5'
6374 3' -61.3 NC_001847.1 + 77060 0.75 0.197316
Target:  5'- cGGcGCGgCACCCgcugcgGCGCGCGCgcgcgccaaUCGGCg -3'
miRNA:   3'- -UCaUGCgGUGGGa-----CGCGCGCG---------AGCCG- -5'
6374 3' -61.3 NC_001847.1 + 85045 0.75 0.217236
Target:  5'- -cUACGCCGCCCgGCGCGgcaGcCUUGGCc -3'
miRNA:   3'- ucAUGCGGUGGGaCGCGCg--C-GAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 60724 0.75 0.197316
Target:  5'- uGGUACauuacgucgGCgGCCC-GCGCGCGCgCGGCg -3'
miRNA:   3'- -UCAUG---------CGgUGGGaCGCGCGCGaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 31760 0.75 0.197316
Target:  5'- uGGUcaGCGUgCACCC-GCGCGCGC-CGGCc -3'
miRNA:   3'- -UCA--UGCG-GUGGGaCGCGCGCGaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 2217 0.75 0.207069
Target:  5'- cAGUAgGCCGCCa-GCGCcgcgGCGCUgGGCg -3'
miRNA:   3'- -UCAUgCGGUGGgaCGCG----CGCGAgCCG- -5'
6374 3' -61.3 NC_001847.1 + 30732 0.75 0.207069
Target:  5'- cAGUGCGCCgcgcgcugGCCCgaGCgGCGCGCU-GGCg -3'
miRNA:   3'- -UCAUGCGG--------UGGGa-CG-CGCGCGAgCCG- -5'
6374 3' -61.3 NC_001847.1 + 26780 0.75 0.222478
Target:  5'- cAGUGCGCgCGCCCuccUGCGCGcCGCagacgaCGGCc -3'
miRNA:   3'- -UCAUGCG-GUGGG---ACGCGC-GCGa-----GCCG- -5'
6374 3' -61.3 NC_001847.1 + 36371 0.75 0.207069
Target:  5'- --gGCGCCgccgcgGCCCgggcaGCGCGCGCcgCGGCg -3'
miRNA:   3'- ucaUGCGG------UGGGa----CGCGCGCGa-GCCG- -5'
6374 3' -61.3 NC_001847.1 + 28499 0.75 0.207069
Target:  5'- --gGCGCCGCCgCUagcGCGCGCGCUuuuugccgUGGCg -3'
miRNA:   3'- ucaUGCGGUGG-GA---CGCGCGCGA--------GCCG- -5'
6374 3' -61.3 NC_001847.1 + 133545 0.75 0.207069
Target:  5'- cAGUGCGCCgcgcgcugGCCCgaGCgGCGCGCU-GGCg -3'
miRNA:   3'- -UCAUGCGG--------UGGGa-CG-CGCGCGAgCCG- -5'
6374 3' -61.3 NC_001847.1 + 57607 0.74 0.227827
Target:  5'- gGGUGCGCCacGCCCUcGCGCuCGCa-GGCa -3'
miRNA:   3'- -UCAUGCGG--UGGGA-CGCGcGCGagCCG- -5'
6374 3' -61.3 NC_001847.1 + 106286 0.74 0.233285
Target:  5'- --aGCGCCGCCg-GCGuCGCGCgcgCGGCc -3'
miRNA:   3'- ucaUGCGGUGGgaCGC-GCGCGa--GCCG- -5'
6374 3' -61.3 NC_001847.1 + 30510 0.74 0.233285
Target:  5'- gGGcGCGCCGgaCgUGaGCGCGCUCGGCg -3'
miRNA:   3'- -UCaUGCGGUg-GgACgCGCGCGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 60466 0.74 0.256222
Target:  5'- cGgcCGCCGUCCUGcCGCG-GCUCGGCc -3'
miRNA:   3'- uCauGCGGUGGGAC-GCGCgCGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 10577 0.74 0.232734
Target:  5'- --gGCGCCGgcggcccCCCcGCGCGCGCgggcCGGCg -3'
miRNA:   3'- ucaUGCGGU-------GGGaCGCGCGCGa---GCCG- -5'
6374 3' -61.3 NC_001847.1 + 45475 0.74 0.233285
Target:  5'- --cGCGCCAgUC-GCGCGUGCUCGGg -3'
miRNA:   3'- ucaUGCGGUgGGaCGCGCGCGAGCCg -5'
6374 3' -61.3 NC_001847.1 + 99151 0.74 0.250319
Target:  5'- --cGCgGCCGCCugcagcgcggCUGCGCGCGCcUUGGCg -3'
miRNA:   3'- ucaUG-CGGUGG----------GACGCGCGCG-AGCCG- -5'
6374 3' -61.3 NC_001847.1 + 122028 0.74 0.233285
Target:  5'- --gGCGCCGCCC-GCGCGC-CcCGGCc -3'
miRNA:   3'- ucaUGCGGUGGGaCGCGCGcGaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 63347 0.74 0.256222
Target:  5'- ---uCGCCGCCCagGgGCGCGUgCGGCa -3'
miRNA:   3'- ucauGCGGUGGGa-CgCGCGCGaGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.