miRNA display CGI


Results 81 - 100 of 799 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6374 3' -61.3 NC_001847.1 + 88814 0.74 0.232734
Target:  5'- --gACGCgGCCCgcggGCGgccgugcUGCGCUCGGCg -3'
miRNA:   3'- ucaUGCGgUGGGa---CGC-------GCGCGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 133323 0.74 0.233285
Target:  5'- gGGcGCGCCGgaCgUGaGCGCGCUCGGCg -3'
miRNA:   3'- -UCaUGCGGUg-GgACgCGCGCGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 45475 0.74 0.233285
Target:  5'- --cGCGCCAgUC-GCGCGUGCUCGGg -3'
miRNA:   3'- ucaUGCGGUgGGaCGCGCGCGAGCCg -5'
6374 3' -61.3 NC_001847.1 + 10577 0.74 0.232734
Target:  5'- --gGCGCCGgcggcccCCCcGCGCGCGCgggcCGGCg -3'
miRNA:   3'- ucaUGCGGU-------GGGaCGCGCGCGa---GCCG- -5'
6374 3' -61.3 NC_001847.1 + 88906 0.74 0.238852
Target:  5'- gGGgGCgGCUcCCUUGCGCGCGCgCGGCu -3'
miRNA:   3'- -UCaUG-CGGuGGGACGCGCGCGaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 34535 0.74 0.256222
Target:  5'- -aUGCGCCGCCC-GcCGgGCGCUUGGg -3'
miRNA:   3'- ucAUGCGGUGGGaC-GCgCGCGAGCCg -5'
6374 3' -61.3 NC_001847.1 + 38054 0.74 0.238852
Target:  5'- --cGCGCCGCCgcggcuaagCUGCGCGCGg-CGGCc -3'
miRNA:   3'- ucaUGCGGUGG---------GACGCGCGCgaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 99151 0.74 0.250319
Target:  5'- --cGCgGCCGCCugcagcgcggCUGCGCGCGCcUUGGCg -3'
miRNA:   3'- ucaUG-CGGUGG----------GACGCGCGCG-AGCCG- -5'
6374 3' -61.3 NC_001847.1 + 113390 0.74 0.232734
Target:  5'- --gGCGCCGgcggcccCCCcGCGCGCGCgggcCGGCg -3'
miRNA:   3'- ucaUGCGGU-------GGGaCGCGCGCGa---GCCG- -5'
6374 3' -61.3 NC_001847.1 + 73267 0.74 0.250319
Target:  5'- ---uCGCCGugcaacCCCcGCGgGCGCUCGGCa -3'
miRNA:   3'- ucauGCGGU------GGGaCGCgCGCGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 120242 0.74 0.24453
Target:  5'- gAGgcaGUCGgCCUGCGCGCGgaCGGCc -3'
miRNA:   3'- -UCaugCGGUgGGACGCGCGCgaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 90288 0.74 0.24453
Target:  5'- gGGUugGgCCAaaaCCUcggcgaGCGCGCGUUCGGUg -3'
miRNA:   3'- -UCAugC-GGUg--GGA------CGCGCGCGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 30510 0.74 0.233285
Target:  5'- gGGcGCGCCGgaCgUGaGCGCGCUCGGCg -3'
miRNA:   3'- -UCaUGCGGUg-GgACgCGCGCGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 122028 0.74 0.233285
Target:  5'- --gGCGCCGCCC-GCGCGC-CcCGGCc -3'
miRNA:   3'- ucaUGCGGUGGGaCGCGCGcGaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 106286 0.74 0.233285
Target:  5'- --aGCGCCGCCg-GCGuCGCGCgcgCGGCc -3'
miRNA:   3'- ucaUGCGGUGGgaCGC-GCGCGa--GCCG- -5'
6374 3' -61.3 NC_001847.1 + 63347 0.74 0.256222
Target:  5'- ---uCGCCGCCCagGgGCGCGUgCGGCa -3'
miRNA:   3'- ucauGCGGUGGGa-CgCGCGCGaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 95500 0.74 0.238852
Target:  5'- -uUGCGCCGCCCgugggccugGCGgGCGCgccaGGCu -3'
miRNA:   3'- ucAUGCGGUGGGa--------CGCgCGCGag--CCG- -5'
6374 3' -61.3 NC_001847.1 + 57607 0.74 0.227827
Target:  5'- gGGUGCGCCacGCCCUcGCGCuCGCa-GGCa -3'
miRNA:   3'- -UCAUGCGG--UGGGA-CGCGcGCGagCCG- -5'
6374 3' -61.3 NC_001847.1 + 77950 0.74 0.250319
Target:  5'- --aACGCCGCCggGCGCGCGCaUCGaGUu -3'
miRNA:   3'- ucaUGCGGUGGgaCGCGCGCG-AGC-CG- -5'
6374 3' -61.3 NC_001847.1 + 99569 0.73 0.262237
Target:  5'- aGGUugGCCagcccggcGCCCUcgucgcggucGCGCGcCGCcUCGGCa -3'
miRNA:   3'- -UCAugCGG--------UGGGA----------CGCGC-GCG-AGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.