miRNA display CGI


Results 101 - 120 of 799 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6374 3' -61.3 NC_001847.1 + 104917 0.73 0.274612
Target:  5'- --cGCGCaccucgGCCCggGCGCGCGCggcuUCGGCg -3'
miRNA:   3'- ucaUGCGg-----UGGGa-CGCGCGCG----AGCCG- -5'
6374 3' -61.3 NC_001847.1 + 82838 0.73 0.274612
Target:  5'- cGGUugGCGCCGCCC-GCGCccGCGgUCGcGCa -3'
miRNA:   3'- -UCA--UGCGGUGGGaCGCG--CGCgAGC-CG- -5'
6374 3' -61.3 NC_001847.1 + 100372 0.73 0.294044
Target:  5'- --cGCGCCGCggCCgcgGCGCGCagccgcgccaGCUCGGCc -3'
miRNA:   3'- ucaUGCGGUG--GGa--CGCGCG----------CGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 4276 0.73 0.262237
Target:  5'- -uUugGCgGCCaCgagGCGCGCGC-CGGCg -3'
miRNA:   3'- ucAugCGgUGG-Ga--CGCGCGCGaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 1850 0.73 0.268367
Target:  5'- --aGCGCCcgGCCCagGCGUGCGagUCGGCg -3'
miRNA:   3'- ucaUGCGG--UGGGa-CGCGCGCg-AGCCG- -5'
6374 3' -61.3 NC_001847.1 + 101471 0.73 0.294044
Target:  5'- -cUGCGCCucuaGCCCcGCGCGgGCcgCGGCc -3'
miRNA:   3'- ucAUGCGG----UGGGaCGCGCgCGa-GCCG- -5'
6374 3' -61.3 NC_001847.1 + 130119 0.73 0.280973
Target:  5'- gAGUACGagagCGCCCU-CGCGCGCgagGGCg -3'
miRNA:   3'- -UCAUGCg---GUGGGAcGCGCGCGag-CCG- -5'
6374 3' -61.3 NC_001847.1 + 115884 0.73 0.294044
Target:  5'- -cUGCGCCGCCggCUcGCGC-CGCUUGGCc -3'
miRNA:   3'- ucAUGCGGUGG--GA-CGCGcGCGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 65524 0.73 0.280973
Target:  5'- cAGUGCgGCCGCCCgGcCGCGCcGCUCGu- -3'
miRNA:   3'- -UCAUG-CGGUGGGaC-GCGCG-CGAGCcg -5'
6374 3' -61.3 NC_001847.1 + 15055 0.73 0.262237
Target:  5'- --gGCGCUuuaucucccGCCCcGCGCG-GCUCGGCa -3'
miRNA:   3'- ucaUGCGG---------UGGGaCGCGCgCGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 74330 0.73 0.262237
Target:  5'- cGGUGcCGCUGCCgCagGCGCGCGCgcuggUGGCg -3'
miRNA:   3'- -UCAU-GCGGUGG-Ga-CGCGCGCGa----GCCG- -5'
6374 3' -61.3 NC_001847.1 + 66208 0.73 0.268367
Target:  5'- --gGCGCCGCCCaGCG-GCGgCUCGGg -3'
miRNA:   3'- ucaUGCGGUGGGaCGCgCGC-GAGCCg -5'
6374 3' -61.3 NC_001847.1 + 29910 0.73 0.262237
Target:  5'- aAGUGCGCC-CgCCUGUgcccGCGCGCccgCGGUg -3'
miRNA:   3'- -UCAUGCGGuG-GGACG----CGCGCGa--GCCG- -5'
6374 3' -61.3 NC_001847.1 + 86649 0.73 0.294044
Target:  5'- --cGCGCCGCCCcggagcGCGcCGCGCUCGacccGCg -3'
miRNA:   3'- ucaUGCGGUGGGa-----CGC-GCGCGAGC----CG- -5'
6374 3' -61.3 NC_001847.1 + 51509 0.73 0.294044
Target:  5'- --aGCGCCGCgCCgGUGCgGCGC-CGGCa -3'
miRNA:   3'- ucaUGCGGUG-GGaCGCG-CGCGaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 99569 0.73 0.262237
Target:  5'- aGGUugGCCagcccggcGCCCUcgucgcggucGCGCGcCGCcUCGGCa -3'
miRNA:   3'- -UCAugCGG--------UGGGA----------CGCGC-GCG-AGCCG- -5'
6374 3' -61.3 NC_001847.1 + 115720 0.73 0.294044
Target:  5'- uGUGCGCUugCCgccacGgGCGCGCUggUGGCc -3'
miRNA:   3'- uCAUGCGGugGGa----CgCGCGCGA--GCCG- -5'
6374 3' -61.3 NC_001847.1 + 75824 0.73 0.280973
Target:  5'- uGGUacgGCGCCGCCg-GCGcCGCGCcUGGCa -3'
miRNA:   3'- -UCA---UGCGGUGGgaCGC-GCGCGaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 91561 0.73 0.274612
Target:  5'- --aGCGCCACgCUgggGCGCGCGUcgcccgCGGCg -3'
miRNA:   3'- ucaUGCGGUG-GGa--CGCGCGCGa-----GCCG- -5'
6374 3' -61.3 NC_001847.1 + 21736 0.73 0.268367
Target:  5'- cGGgccgGCGCCGgCCcGCGCGCGCgggggggccgcCGGCg -3'
miRNA:   3'- -UCa---UGCGGUgGGaCGCGCGCGa----------GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.