miRNA display CGI


Results 121 - 140 of 799 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6374 3' -61.3 NC_001847.1 + 82838 0.73 0.274612
Target:  5'- cGGUugGCGCCGCCC-GCGCccGCGgUCGcGCa -3'
miRNA:   3'- -UCA--UGCGGUGGGaCGCG--CGCgAGC-CG- -5'
6374 3' -61.3 NC_001847.1 + 84638 0.73 0.274612
Target:  5'- --cAUGCCGCggCUGCuGCGCGCUCGGg -3'
miRNA:   3'- ucaUGCGGUGg-GACG-CGCGCGAGCCg -5'
6374 3' -61.3 NC_001847.1 + 26369 0.73 0.294044
Target:  5'- gGGUGgGCCGCCCggcaGCGUccgGCGCccagcgCGGCa -3'
miRNA:   3'- -UCAUgCGGUGGGa---CGCG---CGCGa-----GCCG- -5'
6374 3' -61.3 NC_001847.1 + 74646 0.73 0.28745
Target:  5'- aAGgccCGCCGgCCcGCGCGCGCacaaagCGGCg -3'
miRNA:   3'- -UCau-GCGGUgGGaCGCGCGCGa-----GCCG- -5'
6374 3' -61.3 NC_001847.1 + 5010 0.73 0.274612
Target:  5'- -uUGCGCCucGCCCU-CGCGCGCgagGGCg -3'
miRNA:   3'- ucAUGCGG--UGGGAcGCGCGCGag-CCG- -5'
6374 3' -61.3 NC_001847.1 + 100372 0.73 0.294044
Target:  5'- --cGCGCCGCggCCgcgGCGCGCagccgcgccaGCUCGGCc -3'
miRNA:   3'- ucaUGCGGUG--GGa--CGCGCG----------CGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 130119 0.73 0.280973
Target:  5'- gAGUACGagagCGCCCU-CGCGCGCgagGGCg -3'
miRNA:   3'- -UCAUGCg---GUGGGAcGCGCGCGag-CCG- -5'
6374 3' -61.3 NC_001847.1 + 24450 0.73 0.29338
Target:  5'- gAGcGCGCCGCCCUcacccucGCGCaCGCagcgCGGCa -3'
miRNA:   3'- -UCaUGCGGUGGGA-------CGCGcGCGa---GCCG- -5'
6374 3' -61.3 NC_001847.1 + 4276 0.73 0.262237
Target:  5'- -uUugGCgGCCaCgagGCGCGCGC-CGGCg -3'
miRNA:   3'- ucAugCGgUGG-Ga--CGCGCGCGaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 6912 0.73 0.294044
Target:  5'- --cGCGCgCGCCCUGCGCGCuGUUgaaGGUg -3'
miRNA:   3'- ucaUGCG-GUGGGACGCGCG-CGAg--CCG- -5'
6374 3' -61.3 NC_001847.1 + 104663 0.73 0.268367
Target:  5'- --aGCGCCcgGCCCagGCGUGCGagUCGGCg -3'
miRNA:   3'- ucaUGCGG--UGGGa-CGCGCGCg-AGCCG- -5'
6374 3' -61.3 NC_001847.1 + 121129 0.73 0.294044
Target:  5'- -cUGCGCCGCCgccugCUGcCGUGCuCUCGGCg -3'
miRNA:   3'- ucAUGCGGUGG-----GAC-GCGCGcGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 115720 0.73 0.294044
Target:  5'- uGUGCGCUugCCgccacGgGCGCGCUggUGGCc -3'
miRNA:   3'- uCAUGCGGugGGa----CgCGCGCGA--GCCG- -5'
6374 3' -61.3 NC_001847.1 + 101471 0.73 0.294044
Target:  5'- -cUGCGCCucuaGCCCcGCGCGgGCcgCGGCc -3'
miRNA:   3'- ucAUGCGG----UGGGaCGCGCgCGa-GCCG- -5'
6374 3' -61.3 NC_001847.1 + 73658 0.73 0.28745
Target:  5'- cGUAC-CCGCCgCUGUGCGCcaGCgacgCGGCg -3'
miRNA:   3'- uCAUGcGGUGG-GACGCGCG--CGa---GCCG- -5'
6374 3' -61.3 NC_001847.1 + 104917 0.73 0.274612
Target:  5'- --cGCGCaccucgGCCCggGCGCGCGCggcuUCGGCg -3'
miRNA:   3'- ucaUGCGg-----UGGGa-CGCGCGCG----AGCCG- -5'
6374 3' -61.3 NC_001847.1 + 86649 0.73 0.294044
Target:  5'- --cGCGCCGCCCcggagcGCGcCGCGCUCGacccGCg -3'
miRNA:   3'- ucaUGCGGUGGGa-----CGC-GCGCGAGC----CG- -5'
6374 3' -61.3 NC_001847.1 + 71400 0.72 0.307585
Target:  5'- --cGCGCCGCCaggcgGCGCuGuUGCUCGGCc -3'
miRNA:   3'- ucaUGCGGUGGga---CGCG-C-GCGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 61504 0.72 0.300756
Target:  5'- gGGUACGCC-UCCUGaaacaGCGCGCaCGGg -3'
miRNA:   3'- -UCAUGCGGuGGGACg----CGCGCGaGCCg -5'
6374 3' -61.3 NC_001847.1 + 83285 0.72 0.300756
Target:  5'- aGGUugGCCAUguaaaaCUGCGC-CaGCUCGGCc -3'
miRNA:   3'- -UCAugCGGUGg-----GACGCGcG-CGAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.