miRNA display CGI


Results 41 - 60 of 799 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6374 3' -61.3 NC_001847.1 + 64395 0.76 0.187966
Target:  5'- --gGCGcCCGCUCUGCGCgGCGCUauUGGCa -3'
miRNA:   3'- ucaUGC-GGUGGGACGCG-CGCGA--GCCG- -5'
6374 3' -61.3 NC_001847.1 + 30375 0.76 0.187966
Target:  5'- --gGCGCCGCCCgGCGaggacgaGCGC-CGGCg -3'
miRNA:   3'- ucaUGCGGUGGGaCGCg------CGCGaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 133188 0.76 0.187966
Target:  5'- --gGCGCCGCCCgGCGaggacgaGCGC-CGGCg -3'
miRNA:   3'- ucaUGCGGUGGGaCGCg------CGCGaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 134048 0.76 0.187966
Target:  5'- --gGCGCCGCCCgcgGcCGCgGCGCcCGGCg -3'
miRNA:   3'- ucaUGCGGUGGGa--C-GCG-CGCGaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 31235 0.76 0.187966
Target:  5'- --gGCGCCGCCCgcgGcCGCgGCGCcCGGCg -3'
miRNA:   3'- ucaUGCGGUGGGa--C-GCG-CGCGaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 30885 0.76 0.189805
Target:  5'- -uUGCGCCagucgcccggccgcaGCCCggugagGCGCGCGC-CGGCg -3'
miRNA:   3'- ucAUGCGG---------------UGGGa-----CGCGCGCGaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 36419 0.76 0.192592
Target:  5'- --cGCGCagACCCUGCGaCGCGCgccguagCGGCg -3'
miRNA:   3'- ucaUGCGg-UGGGACGC-GCGCGa------GCCG- -5'
6374 3' -61.3 NC_001847.1 + 74186 0.76 0.192592
Target:  5'- gGGgACGCCAaccugacguucCUCUGCGCGCGCUaugUGGCu -3'
miRNA:   3'- -UCaUGCGGU-----------GGGACGCGCGCGA---GCCG- -5'
6374 3' -61.3 NC_001847.1 + 106085 0.76 0.194469
Target:  5'- --gGCGCCGCgCggccggcgagcacgGCGCGCaGCUCGGCg -3'
miRNA:   3'- ucaUGCGGUGgGa-------------CGCGCG-CGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 3272 0.76 0.194469
Target:  5'- --gGCGCCGCgCggccggcgagcacgGCGCGCaGCUCGGCg -3'
miRNA:   3'- ucaUGCGGUGgGa-------------CGCGCG-CGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 91727 0.76 0.194469
Target:  5'- --gACGCgaggcccagcugcagCGCCCUGCGCGCG-UCGGCc -3'
miRNA:   3'- ucaUGCG---------------GUGGGACGCGCGCgAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 13280 0.75 0.197316
Target:  5'- cGGUGC-CgGCCCUGUGCGCGCgcuacgCGGg -3'
miRNA:   3'- -UCAUGcGgUGGGACGCGCGCGa-----GCCg -5'
6374 3' -61.3 NC_001847.1 + 3233 0.75 0.197316
Target:  5'- --cGCGCCGCCC-GCGcCGUGCUcgcCGGCg -3'
miRNA:   3'- ucaUGCGGUGGGaCGC-GCGCGA---GCCG- -5'
6374 3' -61.3 NC_001847.1 + 60724 0.75 0.197316
Target:  5'- uGGUACauuacgucgGCgGCCC-GCGCGCGCgCGGCg -3'
miRNA:   3'- -UCAUG---------CGgUGGGaCGCGCGCGaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 31760 0.75 0.197316
Target:  5'- uGGUcaGCGUgCACCC-GCGCGCGC-CGGCc -3'
miRNA:   3'- -UCA--UGCG-GUGGGaCGCGCGCGaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 106046 0.75 0.197316
Target:  5'- --cGCGCCGCCC-GCGcCGUGCUcgcCGGCg -3'
miRNA:   3'- ucaUGCGGUGGGaCGC-GCGCGA---GCCG- -5'
6374 3' -61.3 NC_001847.1 + 77060 0.75 0.197316
Target:  5'- cGGcGCGgCACCCgcugcgGCGCGCGCgcgcgccaaUCGGCg -3'
miRNA:   3'- -UCaUGCgGUGGGa-----CGCGCGCG---------AGCCG- -5'
6374 3' -61.3 NC_001847.1 + 30732 0.75 0.207069
Target:  5'- cAGUGCGCCgcgcgcugGCCCgaGCgGCGCGCU-GGCg -3'
miRNA:   3'- -UCAUGCGG--------UGGGa-CG-CGCGCGAgCCG- -5'
6374 3' -61.3 NC_001847.1 + 2217 0.75 0.207069
Target:  5'- cAGUAgGCCGCCa-GCGCcgcgGCGCUgGGCg -3'
miRNA:   3'- -UCAUgCGGUGGgaCGCG----CGCGAgCCG- -5'
6374 3' -61.3 NC_001847.1 + 133545 0.75 0.207069
Target:  5'- cAGUGCGCCgcgcgcugGCCCgaGCgGCGCGCU-GGCg -3'
miRNA:   3'- -UCAUGCGG--------UGGGa-CG-CGCGCGAgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.