Results 81 - 100 of 799 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6374 | 3' | -61.3 | NC_001847.1 | + | 30510 | 0.74 | 0.233285 |
Target: 5'- gGGcGCGCCGgaCgUGaGCGCGCUCGGCg -3' miRNA: 3'- -UCaUGCGGUg-GgACgCGCGCGAGCCG- -5' |
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6374 | 3' | -61.3 | NC_001847.1 | + | 82547 | 0.74 | 0.238852 |
Target: 5'- --gGCGCCGCCC---GCGgGCUCGGCc -3' miRNA: 3'- ucaUGCGGUGGGacgCGCgCGAGCCG- -5' |
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6374 | 3' | -61.3 | NC_001847.1 | + | 38054 | 0.74 | 0.238852 |
Target: 5'- --cGCGCCGCCgcggcuaagCUGCGCGCGg-CGGCc -3' miRNA: 3'- ucaUGCGGUGG---------GACGCGCGCgaGCCG- -5' |
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6374 | 3' | -61.3 | NC_001847.1 | + | 37200 | 0.74 | 0.238852 |
Target: 5'- cGGUGCGaggCGCCCgGUGC-CGCUUGGCg -3' miRNA: 3'- -UCAUGCg--GUGGGaCGCGcGCGAGCCG- -5' |
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6374 | 3' | -61.3 | NC_001847.1 | + | 88906 | 0.74 | 0.238852 |
Target: 5'- gGGgGCgGCUcCCUUGCGCGCGCgCGGCu -3' miRNA: 3'- -UCaUG-CGGuGGGACGCGCGCGaGCCG- -5' |
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6374 | 3' | -61.3 | NC_001847.1 | + | 95500 | 0.74 | 0.238852 |
Target: 5'- -uUGCGCCGCCCgugggccugGCGgGCGCgccaGGCu -3' miRNA: 3'- ucAUGCGGUGGGa--------CGCgCGCGag--CCG- -5' |
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6374 | 3' | -61.3 | NC_001847.1 | + | 100722 | 0.74 | 0.238852 |
Target: 5'- cGGUGCGCCGCCucuuCUGCGCcgaGCuCUCGGg -3' miRNA: 3'- -UCAUGCGGUGG----GACGCG---CGcGAGCCg -5' |
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6374 | 3' | -61.3 | NC_001847.1 | + | 31985 | 0.74 | 0.24111 |
Target: 5'- --gACGCCGCCCUcGagccgcgaggaccuuCGCGCGC-CGGCg -3' miRNA: 3'- ucaUGCGGUGGGA-C---------------GCGCGCGaGCCG- -5' |
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6374 | 3' | -61.3 | NC_001847.1 | + | 90288 | 0.74 | 0.24453 |
Target: 5'- gGGUugGgCCAaaaCCUcggcgaGCGCGCGUUCGGUg -3' miRNA: 3'- -UCAugC-GGUg--GGA------CGCGCGCGAGCCG- -5' |
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6374 | 3' | -61.3 | NC_001847.1 | + | 120242 | 0.74 | 0.24453 |
Target: 5'- gAGgcaGUCGgCCUGCGCGCGgaCGGCc -3' miRNA: 3'- -UCaugCGGUgGGACGCGCGCgaGCCG- -5' |
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6374 | 3' | -61.3 | NC_001847.1 | + | 99151 | 0.74 | 0.250319 |
Target: 5'- --cGCgGCCGCCugcagcgcggCUGCGCGCGCcUUGGCg -3' miRNA: 3'- ucaUG-CGGUGG----------GACGCGCGCG-AGCCG- -5' |
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6374 | 3' | -61.3 | NC_001847.1 | + | 77950 | 0.74 | 0.250319 |
Target: 5'- --aACGCCGCCggGCGCGCGCaUCGaGUu -3' miRNA: 3'- ucaUGCGGUGGgaCGCGCGCG-AGC-CG- -5' |
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6374 | 3' | -61.3 | NC_001847.1 | + | 44755 | 0.74 | 0.250319 |
Target: 5'- gAGUACcggGCCuuCCUGgccuccaucCGCGCGCUUGGCg -3' miRNA: 3'- -UCAUG---CGGugGGAC---------GCGCGCGAGCCG- -5' |
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6374 | 3' | -61.3 | NC_001847.1 | + | 73267 | 0.74 | 0.250319 |
Target: 5'- ---uCGCCGugcaacCCCcGCGgGCGCUCGGCa -3' miRNA: 3'- ucauGCGGU------GGGaCGCgCGCGAGCCG- -5' |
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6374 | 3' | -61.3 | NC_001847.1 | + | 87076 | 0.74 | 0.256222 |
Target: 5'- cGUGCGCC-CCCgccuuucgcgGCGCGCGCggacUCGcGCu -3' miRNA: 3'- uCAUGCGGuGGGa---------CGCGCGCG----AGC-CG- -5' |
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6374 | 3' | -61.3 | NC_001847.1 | + | 60466 | 0.74 | 0.256222 |
Target: 5'- cGgcCGCCGUCCUGcCGCG-GCUCGGCc -3' miRNA: 3'- uCauGCGGUGGGAC-GCGCgCGAGCCG- -5' |
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6374 | 3' | -61.3 | NC_001847.1 | + | 34535 | 0.74 | 0.256222 |
Target: 5'- -aUGCGCCGCCC-GcCGgGCGCUUGGg -3' miRNA: 3'- ucAUGCGGUGGGaC-GCgCGCGAGCCg -5' |
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6374 | 3' | -61.3 | NC_001847.1 | + | 89594 | 0.74 | 0.256222 |
Target: 5'- ---cCGCCugCgUGCGCGgGCUCuGGCu -3' miRNA: 3'- ucauGCGGugGgACGCGCgCGAG-CCG- -5' |
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6374 | 3' | -61.3 | NC_001847.1 | + | 63347 | 0.74 | 0.256222 |
Target: 5'- ---uCGCCGCCCagGgGCGCGUgCGGCa -3' miRNA: 3'- ucauGCGGUGGGa-CgCGCGCGaGCCG- -5' |
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6374 | 3' | -61.3 | NC_001847.1 | + | 99569 | 0.73 | 0.262237 |
Target: 5'- aGGUugGCCagcccggcGCCCUcgucgcggucGCGCGcCGCcUCGGCa -3' miRNA: 3'- -UCAugCGG--------UGGGA----------CGCGC-GCG-AGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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