miRNA display CGI


Results 61 - 80 of 799 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6374 3' -61.3 NC_001847.1 + 39999 0.66 0.652221
Target:  5'- --cAUGCCggcACCCccaaGCGCaGCGC-CGGCg -3'
miRNA:   3'- ucaUGCGG---UGGGa---CGCG-CGCGaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 33851 0.66 0.652221
Target:  5'- cAGaGCGCagaggaCUGCGCGCGCUUcuugcaggaGGCg -3'
miRNA:   3'- -UCaUGCGgugg--GACGCGCGCGAG---------CCG- -5'
6374 3' -61.3 NC_001847.1 + 80341 0.66 0.652221
Target:  5'- --cGCGCuCGCCa-GCGCgGCGCggaaggcgCGGCg -3'
miRNA:   3'- ucaUGCG-GUGGgaCGCG-CGCGa-------GCCG- -5'
6374 3' -61.3 NC_001847.1 + 34503 0.66 0.652221
Target:  5'- --aGCGCgGCCCUG-GCGcCGCagccaGGCg -3'
miRNA:   3'- ucaUGCGgUGGGACgCGC-GCGag---CCG- -5'
6374 3' -61.3 NC_001847.1 + 51607 0.66 0.652221
Target:  5'- cAGUGCuCCACCCcgggGCG-GCGCaCGGa -3'
miRNA:   3'- -UCAUGcGGUGGGa---CGCgCGCGaGCCg -5'
6374 3' -61.3 NC_001847.1 + 133747 0.66 0.652221
Target:  5'- ---gUGCCugCCUGUGuUGUcggggcaagucgGCUCGGCg -3'
miRNA:   3'- ucauGCGGugGGACGC-GCG------------CGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 70691 0.66 0.652221
Target:  5'- --cGCGCCGCC--GCGgGCGg-CGGCg -3'
miRNA:   3'- ucaUGCGGUGGgaCGCgCGCgaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 74355 0.66 0.652221
Target:  5'- --gGCGCCACCaaggugggcugCUGCGCcucgugGCGCUgGaGCu -3'
miRNA:   3'- ucaUGCGGUGG-----------GACGCG------CGCGAgC-CG- -5'
6374 3' -61.3 NC_001847.1 + 79867 0.66 0.652221
Target:  5'- ---cUGCCGCCCguccgggcccgGCGC-CGUUCGGUc -3'
miRNA:   3'- ucauGCGGUGGGa----------CGCGcGCGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 92145 0.66 0.652221
Target:  5'- cGGcGCGCCcCCCcgGCG-GCGUUccCGGCg -3'
miRNA:   3'- -UCaUGCGGuGGGa-CGCgCGCGA--GCCG- -5'
6374 3' -61.3 NC_001847.1 + 129748 0.66 0.652221
Target:  5'- --aGCGCgCGgCCUGUGC-CGC-CGGCc -3'
miRNA:   3'- ucaUGCG-GUgGGACGCGcGCGaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 83919 0.66 0.652221
Target:  5'- cGGcGCGCCcgcgagcaggGCCCgcucgaaGUGCGCGCggGGCc -3'
miRNA:   3'- -UCaUGCGG----------UGGGa------CGCGCGCGagCCG- -5'
6374 3' -61.3 NC_001847.1 + 60835 0.66 0.652221
Target:  5'- gAGggGCGCCcgcgGCgCUGCGCGgCGCcagGGCg -3'
miRNA:   3'- -UCa-UGCGG----UGgGACGCGC-GCGag-CCG- -5'
6374 3' -61.3 NC_001847.1 + 32525 0.66 0.652221
Target:  5'- --cACGCgGCUgucggaggcgaUGCGCGCGCagcccUCGGCg -3'
miRNA:   3'- ucaUGCGgUGGg----------ACGCGCGCG-----AGCCG- -5'
6374 3' -61.3 NC_001847.1 + 18944 0.66 0.652221
Target:  5'- --aGCGCCGCCgCgGCGUcCGggCGGCg -3'
miRNA:   3'- ucaUGCGGUGG-GaCGCGcGCgaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 131796 0.66 0.652221
Target:  5'- cGUACGCCcccauggccuACCCggagGcCG-GCGC-CGGCg -3'
miRNA:   3'- uCAUGCGG----------UGGGa---C-GCgCGCGaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 56728 0.66 0.652221
Target:  5'- cAGcGCGCgCGCCa-GCaGCGCGCccgcagCGGCg -3'
miRNA:   3'- -UCaUGCG-GUGGgaCG-CGCGCGa-----GCCG- -5'
6374 3' -61.3 NC_001847.1 + 17710 0.66 0.651227
Target:  5'- --cACGCCGCagUGCacguacaGCG-GCUCGGCg -3'
miRNA:   3'- ucaUGCGGUGggACG-------CGCgCGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 59879 0.66 0.649238
Target:  5'- cGGcGCGCgGCCUccgcgUuggcgaggagggcgGCGCGCGCgcgCGGCg -3'
miRNA:   3'- -UCaUGCGgUGGG-----A--------------CGCGCGCGa--GCCG- -5'
6374 3' -61.3 NC_001847.1 + 73856 0.66 0.649238
Target:  5'- --aACGCCGCCgCggUGCGCGgggcgcgucaguucCGC-CGGCg -3'
miRNA:   3'- ucaUGCGGUGG-G--ACGCGC--------------GCGaGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.