miRNA display CGI


Results 41 - 60 of 799 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6374 3' -61.3 NC_001847.1 + 5957 0.69 0.495901
Target:  5'- cGUACGUaCGCgC-GCGCGCGUaagccUCGGCu -3'
miRNA:   3'- uCAUGCG-GUGgGaCGCGCGCG-----AGCCG- -5'
6374 3' -61.3 NC_001847.1 + 6688 0.68 0.524276
Target:  5'- --gGCgGCCGgCCgggcGCGCGCGCagGGCc -3'
miRNA:   3'- ucaUG-CGGUgGGa---CGCGCGCGagCCG- -5'
6374 3' -61.3 NC_001847.1 + 6912 0.73 0.294044
Target:  5'- --cGCGCgCGCCCUGCGCGCuGUUgaaGGUg -3'
miRNA:   3'- ucaUGCG-GUGGGACGCGCG-CGAg--CCG- -5'
6374 3' -61.3 NC_001847.1 + 7378 0.72 0.328057
Target:  5'- --gGCGCCGCugacaguggaggaCgUG-GCGCGCUCGGCa -3'
miRNA:   3'- ucaUGCGGUG-------------GgACgCGCGCGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 7793 0.68 0.505285
Target:  5'- cGGgcccCGCCGcCCCUGC-CGCGgcagccggccgcCUCGGCg -3'
miRNA:   3'- -UCau--GCGGU-GGGACGcGCGC------------GAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 7898 0.66 0.662153
Target:  5'- ----aGCCGCgCgGgGCGCGCggCGGCc -3'
miRNA:   3'- ucaugCGGUGgGaCgCGCGCGa-GCCG- -5'
6374 3' -61.3 NC_001847.1 + 8060 0.67 0.581694
Target:  5'- --cGCGCgGCCC-GCGCGCagaggggggcaccGCcgCGGCg -3'
miRNA:   3'- ucaUGCGgUGGGaCGCGCG-------------CGa-GCCG- -5'
6374 3' -61.3 NC_001847.1 + 8462 0.71 0.351036
Target:  5'- gAGgcgGCGCCggGCCggGgGCgGCGCUCGGCc -3'
miRNA:   3'- -UCa--UGCGG--UGGgaCgCG-CGCGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 8596 0.68 0.505285
Target:  5'- --gGCcCCGCCagggGCG-GCGCUCGGCc -3'
miRNA:   3'- ucaUGcGGUGGga--CGCgCGCGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 9014 0.66 0.642273
Target:  5'- cGUGCGCgGccgcgaccCCCUGCuaGaCGCgaugCGGCg -3'
miRNA:   3'- uCAUGCGgU--------GGGACGcgC-GCGa---GCCG- -5'
6374 3' -61.3 NC_001847.1 + 9160 0.66 0.672063
Target:  5'- uGGU-CGCCgugGCCCUGUaCGCGUaCGGg -3'
miRNA:   3'- -UCAuGCGG---UGGGACGcGCGCGaGCCg -5'
6374 3' -61.3 NC_001847.1 + 10063 0.71 0.37434
Target:  5'- --cACGCgCGCgCUGCGcCGCGCgcucgUCGGCu -3'
miRNA:   3'- ucaUGCG-GUGgGACGC-GCGCG-----AGCCG- -5'
6374 3' -61.3 NC_001847.1 + 10115 0.67 0.572829
Target:  5'- --gGCGCCACgCCcacgGaCGCGUGCUgggaGGCg -3'
miRNA:   3'- ucaUGCGGUG-GGa---C-GCGCGCGAg---CCG- -5'
6374 3' -61.3 NC_001847.1 + 10577 0.74 0.232734
Target:  5'- --gGCGCCGgcggcccCCCcGCGCGCGCgggcCGGCg -3'
miRNA:   3'- ucaUGCGGU-------GGGaCGCGCGCGa---GCCG- -5'
6374 3' -61.3 NC_001847.1 + 10581 0.66 0.642273
Target:  5'- uGUACGCagACgCC-GCGCuGCuCUCGGCa -3'
miRNA:   3'- uCAUGCGg-UG-GGaCGCG-CGcGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 10822 0.72 0.328057
Target:  5'- --cGCGCUGCugcagcaCCUGCGCGCGacggCGGCg -3'
miRNA:   3'- ucaUGCGGUG-------GGACGCGCGCga--GCCG- -5'
6374 3' -61.3 NC_001847.1 + 10968 0.69 0.486596
Target:  5'- uGUACGUgGCgCgGCGCGCGaagucuCUUGGCg -3'
miRNA:   3'- uCAUGCGgUGgGaCGCGCGC------GAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 11255 0.67 0.563016
Target:  5'- cGGgaaGCUugCC-GCGgGCGCUgGGCu -3'
miRNA:   3'- -UCaugCGGugGGaCGCgCGCGAgCCG- -5'
6374 3' -61.3 NC_001847.1 + 11518 0.67 0.572829
Target:  5'- aAGgGCGCCGCCCcggccgaguuUGC-CGC-CUUGGCu -3'
miRNA:   3'- -UCaUGCGGUGGG----------ACGcGCGcGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 11570 0.66 0.632318
Target:  5'- gGGUGCGgCugCCgcgGUGCcgguugcuucuGCGCUggcCGGCg -3'
miRNA:   3'- -UCAUGCgGugGGa--CGCG-----------CGCGA---GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.