miRNA display CGI


Results 81 - 100 of 799 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6374 3' -61.3 NC_001847.1 + 15987 0.67 0.612415
Target:  5'- ---cCGCCGCCCcGCG-GCGgCcgCGGCg -3'
miRNA:   3'- ucauGCGGUGGGaCGCgCGC-Ga-GCCG- -5'
6374 3' -61.3 NC_001847.1 + 16047 0.67 0.612415
Target:  5'- ---cCGCCGCCCcGCG-GCGgCcgCGGCg -3'
miRNA:   3'- ucauGCGGUGGGaCGCgCGC-Ga-GCCG- -5'
6374 3' -61.3 NC_001847.1 + 16303 0.7 0.432642
Target:  5'- cGUAuacCGUCACCCgcgGCGCGgGUguaGGCa -3'
miRNA:   3'- uCAU---GCGGUGGGa--CGCGCgCGag-CCG- -5'
6374 3' -61.3 NC_001847.1 + 16671 0.68 0.514745
Target:  5'- aGGcGCGCCcggGCCUUGCGC-CGCa-GGCa -3'
miRNA:   3'- -UCaUGCGG---UGGGACGCGcGCGagCCG- -5'
6374 3' -61.3 NC_001847.1 + 16679 0.66 0.632318
Target:  5'- --cGCGCaGCCuuggCUGCGCGgGCgagcCGGCa -3'
miRNA:   3'- ucaUGCGgUGG----GACGCGCgCGa---GCCG- -5'
6374 3' -61.3 NC_001847.1 + 16895 0.66 0.639287
Target:  5'- --cACGCCgcgcagguuuaccaGCCC-GgGC-CGCUCGGCg -3'
miRNA:   3'- ucaUGCGG--------------UGGGaCgCGcGCGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 17028 0.69 0.486596
Target:  5'- cGGccuCGCCGCCCUcgaaguacaCGCGCaGCUCGGg -3'
miRNA:   3'- -UCau-GCGGUGGGAc--------GCGCG-CGAGCCg -5'
6374 3' -61.3 NC_001847.1 + 17387 0.69 0.495901
Target:  5'- cGGUGCGUCgugacggucacgACCUUGCGCuGUGaCUUGGUg -3'
miRNA:   3'- -UCAUGCGG------------UGGGACGCG-CGC-GAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 17710 0.66 0.651227
Target:  5'- --cACGCCGCagUGCacguacaGCG-GCUCGGCg -3'
miRNA:   3'- ucaUGCGGUGggACG-------CGCgCGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 17818 0.68 0.505285
Target:  5'- gAGgGCGCCAUgCCaGUGCgGCGCacgUCGGCg -3'
miRNA:   3'- -UCaUGCGGUG-GGaCGCG-CGCG---AGCCG- -5'
6374 3' -61.3 NC_001847.1 + 17958 0.68 0.553249
Target:  5'- cGUGUGCCGCgCUUGCGCucGCGUUCGcucGCg -3'
miRNA:   3'- uCAUGCGGUG-GGACGCG--CGCGAGC---CG- -5'
6374 3' -61.3 NC_001847.1 + 18225 0.69 0.450248
Target:  5'- uGUGCGgCuCUCgGCGCGUGCUCGcGUg -3'
miRNA:   3'- uCAUGCgGuGGGaCGCGCGCGAGC-CG- -5'
6374 3' -61.3 NC_001847.1 + 18532 0.69 0.441395
Target:  5'- gGGcGCGCCGCCgUcCGCGCcGCagagCGGCa -3'
miRNA:   3'- -UCaUGCGGUGGgAcGCGCG-CGa---GCCG- -5'
6374 3' -61.3 NC_001847.1 + 18591 0.71 0.37434
Target:  5'- cGUGCGCCAUUa-GCGCGCcguccgcgGCgUCGGCg -3'
miRNA:   3'- uCAUGCGGUGGgaCGCGCG--------CG-AGCCG- -5'
6374 3' -61.3 NC_001847.1 + 18703 0.67 0.563016
Target:  5'- cGUGCGCCagcgcccaccGCCCUcgagcccaaGCGCGCgGCcCGGg -3'
miRNA:   3'- uCAUGCGG----------UGGGA---------CGCGCG-CGaGCCg -5'
6374 3' -61.3 NC_001847.1 + 18808 0.71 0.366457
Target:  5'- --gGCGCgCGCCa-GCGCGCGCaUgGGCa -3'
miRNA:   3'- ucaUGCG-GUGGgaCGCGCGCG-AgCCG- -5'
6374 3' -61.3 NC_001847.1 + 18944 0.66 0.652221
Target:  5'- --aGCGCCGCCgCgGCGUcCGggCGGCg -3'
miRNA:   3'- ucaUGCGGUGG-GaCGCGcGCgaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 19084 0.68 0.52141
Target:  5'- aAGUGCGCCccgguGCCCgagGCugccgucacaaaguGCGCGCagugcacCGGCa -3'
miRNA:   3'- -UCAUGCGG-----UGGGa--CG--------------CGCGCGa------GCCG- -5'
6374 3' -61.3 NC_001847.1 + 19221 0.67 0.572829
Target:  5'- gAGUGCcgcugcgacaGCCAgCgCCUGCGCGaGC-CGGCc -3'
miRNA:   3'- -UCAUG----------CGGU-G-GGACGCGCgCGaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 19342 0.71 0.382338
Target:  5'- --aGCGCCGCggccggguCUUGCGCGCGCccgaCGGUg -3'
miRNA:   3'- ucaUGCGGUG--------GGACGCGCGCGa---GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.