miRNA display CGI


Results 101 - 120 of 799 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6374 3' -61.3 NC_001847.1 + 19407 0.67 0.592567
Target:  5'- uGUGCccaugGCCACCa-GCGCGCcCguggCGGCa -3'
miRNA:   3'- uCAUG-----CGGUGGgaCGCGCGcGa---GCCG- -5'
6374 3' -61.3 NC_001847.1 + 19731 0.69 0.453816
Target:  5'- aGGUugGCCggacgcggcggGCCgCUuagcgggaaggcgggGUGCGgGCUCGGCg -3'
miRNA:   3'- -UCAugCGG-----------UGG-GA---------------CGCGCgCGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 19846 0.66 0.672063
Target:  5'- --aGCGCCcuugGCCC-GCGCccggggGCGC-CGGCu -3'
miRNA:   3'- ucaUGCGG----UGGGaCGCG------CGCGaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 20040 0.73 0.294044
Target:  5'- cGgcCGCCGCCCUGgGCGCG---GGCa -3'
miRNA:   3'- uCauGCGGUGGGACgCGCGCgagCCG- -5'
6374 3' -61.3 NC_001847.1 + 20116 0.76 0.174673
Target:  5'- cGGacuCGCCGCCCUcaugGCGCGCggcgaacgaaGCUCGGCc -3'
miRNA:   3'- -UCau-GCGGUGGGA----CGCGCG----------CGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 21008 0.71 0.382338
Target:  5'- uGGUGCGaacucaCGCCgaGCGCGCGUgCGaGCa -3'
miRNA:   3'- -UCAUGCg-----GUGGgaCGCGCGCGaGC-CG- -5'
6374 3' -61.3 NC_001847.1 + 21736 0.73 0.268367
Target:  5'- cGGgccgGCGCCGgCCcGCGCGCGCgggggggccgcCGGCg -3'
miRNA:   3'- -UCa---UGCGGUgGGaCGCGCGCGa----------GCCG- -5'
6374 3' -61.3 NC_001847.1 + 21811 0.67 0.581694
Target:  5'- cGUGCGCUGCCacaccgacUUGCaccagccgccaauGCuGCGCUCGGUg -3'
miRNA:   3'- uCAUGCGGUGG--------GACG-------------CG-CGCGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 22091 0.68 0.524276
Target:  5'- cGUGCGCCgacGCgCUGCG-GCuGCUgcCGGCg -3'
miRNA:   3'- uCAUGCGG---UGgGACGCgCG-CGA--GCCG- -5'
6374 3' -61.3 NC_001847.1 + 22182 0.7 0.42399
Target:  5'- --cGCGCCGCgaaUGCGCggGCGCUgGGCc -3'
miRNA:   3'- ucaUGCGGUGgg-ACGCG--CGCGAgCCG- -5'
6374 3' -61.3 NC_001847.1 + 22267 0.71 0.3435
Target:  5'- gAGcGCGCgGCgCaGCGCGCGCgugUCGGCc -3'
miRNA:   3'- -UCaUGCGgUGgGaCGCGCGCG---AGCCG- -5'
6374 3' -61.3 NC_001847.1 + 23314 0.66 0.661161
Target:  5'- --gGCGCCGCUgaGC-CGCGCcacguccUUGGCg -3'
miRNA:   3'- ucaUGCGGUGGgaCGcGCGCG-------AGCCG- -5'
6374 3' -61.3 NC_001847.1 + 23466 0.77 0.15058
Target:  5'- cGUcCGCCGCCUcgGCcauCGCGCUCGGCg -3'
miRNA:   3'- uCAuGCGGUGGGa-CGc--GCGCGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 23637 0.7 0.427438
Target:  5'- cAGUGCGCCcCCCuccucuagccccccgUGUGUGgGCUUGGg -3'
miRNA:   3'- -UCAUGCGGuGGG---------------ACGCGCgCGAGCCg -5'
6374 3' -61.3 NC_001847.1 + 23866 0.66 0.672063
Target:  5'- --aGCGCCGCCCccggcccgGCGC-CGCcuccgaccCGGCg -3'
miRNA:   3'- ucaUGCGGUGGGa-------CGCGcGCGa-------GCCG- -5'
6374 3' -61.3 NC_001847.1 + 24331 0.71 0.351036
Target:  5'- cGGUggcGCGCCACgCC-GCGCGCGgccuuUUCGGUa -3'
miRNA:   3'- -UCA---UGCGGUG-GGaCGCGCGC-----GAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 24450 0.73 0.29338
Target:  5'- gAGcGCGCCGCCCUcacccucGCGCaCGCagcgCGGCa -3'
miRNA:   3'- -UCaUGCGGUGGGA-------CGCGcGCGa---GCCG- -5'
6374 3' -61.3 NC_001847.1 + 24842 0.69 0.477375
Target:  5'- gGGgaugGCGCCAUCUggugGCGaCGCGCaaaauaaCGGCa -3'
miRNA:   3'- -UCa---UGCGGUGGGa---CGC-GCGCGa------GCCG- -5'
6374 3' -61.3 NC_001847.1 + 25185 0.66 0.642273
Target:  5'- aGGUAgcaGCUggccagcgaGCCCcGCGCGCGgC-CGGCa -3'
miRNA:   3'- -UCAUg--CGG---------UGGGaCGCGCGC-GaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 25200 0.66 0.642273
Target:  5'- --aGCGa-GCCCcGCGCGCGgC-CGGCa -3'
miRNA:   3'- ucaUGCggUGGGaCGCGCGC-GaGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.