miRNA display CGI


Results 21 - 40 of 799 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6374 3' -61.3 NC_001847.1 + 132966 0.71 0.3435
Target:  5'- --cACGCCGCCCagGCG-GCGCg-GGCg -3'
miRNA:   3'- ucaUGCGGUGGGa-CGCgCGCGagCCG- -5'
6374 3' -61.3 NC_001847.1 + 132912 0.68 0.543533
Target:  5'- --cACGCCcgcGCCCaGCGCcgcgGCGCUggCGGCc -3'
miRNA:   3'- ucaUGCGG---UGGGaCGCG----CGCGA--GCCG- -5'
6374 3' -61.3 NC_001847.1 + 132286 0.67 0.572829
Target:  5'- --cGCGUCGgCCUgggcgcuggcGCGCGCGCUguucagcccgcCGGCg -3'
miRNA:   3'- ucaUGCGGUgGGA----------CGCGCGCGA-----------GCCG- -5'
6374 3' -61.3 NC_001847.1 + 132167 0.69 0.468241
Target:  5'- cAGcGCGCgGCCCcggcgGCGCuGCGCgccgaggCGGCc -3'
miRNA:   3'- -UCaUGCGgUGGGa----CGCG-CGCGa------GCCG- -5'
6374 3' -61.3 NC_001847.1 + 132131 0.67 0.582681
Target:  5'- --gGCGCgGCCCgcgacgcgGUggaGCGCGCgCGGCu -3'
miRNA:   3'- ucaUGCGgUGGGa-------CG---CGCGCGaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 132091 0.7 0.39867
Target:  5'- --gGCG-CACCCggaGCGCGUGCUCcgGGCc -3'
miRNA:   3'- ucaUGCgGUGGGa--CGCGCGCGAG--CCG- -5'
6374 3' -61.3 NC_001847.1 + 132011 0.66 0.662153
Target:  5'- --gGCGCCGCCggGCucccgGUGCuCUCGGCc -3'
miRNA:   3'- ucaUGCGGUGGgaCG-----CGCGcGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 131890 0.69 0.456502
Target:  5'- --gGCGCCGgcgcCCCUGCcgccggcgagcacgGCGCGggCGGCg -3'
miRNA:   3'- ucaUGCGGU----GGGACG--------------CGCGCgaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 131837 0.68 0.543533
Target:  5'- --aGCGgCGCCC-GCGcCGCGCUCGcCg -3'
miRNA:   3'- ucaUGCgGUGGGaCGC-GCGCGAGCcG- -5'
6374 3' -61.3 NC_001847.1 + 131796 0.66 0.652221
Target:  5'- cGUACGCCcccauggccuACCCggagGcCG-GCGC-CGGCg -3'
miRNA:   3'- uCAUGCGG----------UGGGa---C-GCgCGCGaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 131772 0.7 0.39867
Target:  5'- -uUGCGCgGCUCgGCGCGCGgauugCGGCg -3'
miRNA:   3'- ucAUGCGgUGGGaCGCGCGCga---GCCG- -5'
6374 3' -61.3 NC_001847.1 + 131600 0.68 0.543533
Target:  5'- -cUACGCCGCCgCcGCGCuCGCggccguagUCGGCc -3'
miRNA:   3'- ucAUGCGGUGG-GaCGCGcGCG--------AGCCG- -5'
6374 3' -61.3 NC_001847.1 + 131587 0.72 0.321598
Target:  5'- uGGcGCGCCugCUgcagcgGCGCGUGCagGGCu -3'
miRNA:   3'- -UCaUGCGGugGGa-----CGCGCGCGagCCG- -5'
6374 3' -61.3 NC_001847.1 + 131451 0.72 0.321598
Target:  5'- --cGCGCCuACCUgugGUGCGCGCaggcucgCGGCg -3'
miRNA:   3'- ucaUGCGG-UGGGa--CGCGCGCGa------GCCG- -5'
6374 3' -61.3 NC_001847.1 + 131346 0.8 0.097888
Target:  5'- ---cCGCCGCCCggccGCGUGCGCuUCGGCg -3'
miRNA:   3'- ucauGCGGUGGGa---CGCGCGCG-AGCCG- -5'
6374 3' -61.3 NC_001847.1 + 131239 0.69 0.477375
Target:  5'- cGUGCGuCCGCgCCacCGCGCGCaaCGGCu -3'
miRNA:   3'- uCAUGC-GGUG-GGacGCGCGCGa-GCCG- -5'
6374 3' -61.3 NC_001847.1 + 131159 0.66 0.662153
Target:  5'- -cUugGCCGCgCUG-GCGCuGCUcaCGGCc -3'
miRNA:   3'- ucAugCGGUGgGACgCGCG-CGA--GCCG- -5'
6374 3' -61.3 NC_001847.1 + 130906 0.71 0.351036
Target:  5'- --gGCGCaGCUCgugccgGCGCGCGC-CGGCa -3'
miRNA:   3'- ucaUGCGgUGGGa-----CGCGCGCGaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 130853 0.66 0.672063
Target:  5'- gAGUACcaaGgCGCCg-GCGCGCGCcucgUGGCc -3'
miRNA:   3'- -UCAUG---CgGUGGgaCGCGCGCGa---GCCG- -5'
6374 3' -61.3 NC_001847.1 + 130755 0.69 0.441395
Target:  5'- --aGCGCCuggGCCgCgGCGCGCGCgcucgCGGUc -3'
miRNA:   3'- ucaUGCGG---UGG-GaCGCGCGCGa----GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.