miRNA display CGI


Results 41 - 60 of 799 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6374 3' -61.3 NC_001847.1 + 130712 0.76 0.166283
Target:  5'- cGUGCGCguuuCCCUGCgGCGCGCgcugccgccgUCGGCg -3'
miRNA:   3'- uCAUGCGgu--GGGACG-CGCGCG----------AGCCG- -5'
6374 3' -61.3 NC_001847.1 + 130604 0.67 0.592567
Target:  5'- --cGCGCCACCCgcggGCGgccgcCGCGa--GGCa -3'
miRNA:   3'- ucaUGCGGUGGGa---CGC-----GCGCgagCCG- -5'
6374 3' -61.3 NC_001847.1 + 130167 0.67 0.572829
Target:  5'- gAGgACGUCagcgACCCcGCGgGCGCcCGGCc -3'
miRNA:   3'- -UCaUGCGG----UGGGaCGCgCGCGaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 130140 0.67 0.612415
Target:  5'- --cGCGCCGCCgCcGC-CGCGCUuugccgCGGCc -3'
miRNA:   3'- ucaUGCGGUGG-GaCGcGCGCGA------GCCG- -5'
6374 3' -61.3 NC_001847.1 + 130119 0.73 0.280973
Target:  5'- gAGUACGagagCGCCCU-CGCGCGCgagGGCg -3'
miRNA:   3'- -UCAUGCg---GUGGGAcGCGCGCGag-CCG- -5'
6374 3' -61.3 NC_001847.1 + 129896 0.67 0.563016
Target:  5'- aGGUgagACGCaggcaaACCCUuugccGCGCGCGCcccgcCGGCc -3'
miRNA:   3'- -UCA---UGCGg-----UGGGA-----CGCGCGCGa----GCCG- -5'
6374 3' -61.3 NC_001847.1 + 129748 0.66 0.652221
Target:  5'- --aGCGCgCGgCCUGUGC-CGC-CGGCc -3'
miRNA:   3'- ucaUGCG-GUgGGACGCGcGCGaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 129473 0.69 0.468241
Target:  5'- cGgcCGCCGCC--GCGCGCGa-CGGCg -3'
miRNA:   3'- uCauGCGGUGGgaCGCGCGCgaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 129379 0.67 0.602481
Target:  5'- --gACGCCGCgCUucgcguugGCGCGCcGgaCGGCg -3'
miRNA:   3'- ucaUGCGGUGgGA--------CGCGCG-CgaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 129311 0.69 0.458298
Target:  5'- uGGUGCaaggcggGCCugCCggGCGCggggccggggGCGUUCGGCc -3'
miRNA:   3'- -UCAUG-------CGGugGGa-CGCG----------CGCGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 129261 0.72 0.321598
Target:  5'- cGGcGCgGCCGCCCUGCGCGCaGCgcuGGa -3'
miRNA:   3'- -UCaUG-CGGUGGGACGCGCG-CGag-CCg -5'
6374 3' -61.3 NC_001847.1 + 129039 0.71 0.382338
Target:  5'- --cGCGCCGCgCCUcGCGgGCGuCUCGcGCc -3'
miRNA:   3'- ucaUGCGGUG-GGA-CGCgCGC-GAGC-CG- -5'
6374 3' -61.3 NC_001847.1 + 128610 0.66 0.626345
Target:  5'- uGUugGCCACgcgcuucuacguguuCCagGCugaGCGCGC-CGGCg -3'
miRNA:   3'- uCAugCGGUG---------------GGa-CG---CGCGCGaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 128442 0.91 0.016663
Target:  5'- cAGUGCGCUcgGCCCUGCGCGCGCgccCGGCc -3'
miRNA:   3'- -UCAUGCGG--UGGGACGCGCGCGa--GCCG- -5'
6374 3' -61.3 NC_001847.1 + 127977 0.72 0.336081
Target:  5'- uGUACGCCACCgacggCUGCGCGa--UCGGg -3'
miRNA:   3'- uCAUGCGGUGG-----GACGCGCgcgAGCCg -5'
6374 3' -61.3 NC_001847.1 + 127784 0.66 0.632318
Target:  5'- --gGCGCCGgCa-GCaGCGCGCUgaCGGCu -3'
miRNA:   3'- ucaUGCGGUgGgaCG-CGCGCGA--GCCG- -5'
6374 3' -61.3 NC_001847.1 + 127655 0.69 0.477375
Target:  5'- gGGgaugGCGCCAUCUggugGCGaCGCGCaaaauaaCGGCa -3'
miRNA:   3'- -UCa---UGCGGUGGGa---CGC-GCGCGa------GCCG- -5'
6374 3' -61.3 NC_001847.1 + 127421 0.7 0.418849
Target:  5'- --cGCGCCcgcGCCCUGCGCcugaaugcccaaggcGCGCUCcaGCa -3'
miRNA:   3'- ucaUGCGG---UGGGACGCG---------------CGCGAGc-CG- -5'
6374 3' -61.3 NC_001847.1 + 127078 0.7 0.407002
Target:  5'- cGGUGCcCCcCUCUGCGCGCGggccgcgCGGCu -3'
miRNA:   3'- -UCAUGcGGuGGGACGCGCGCga-----GCCG- -5'
6374 3' -61.3 NC_001847.1 + 126679 0.66 0.672063
Target:  5'- --aGCGCCGCCCccggcccgGCGC-CGCcuccgaccCGGCg -3'
miRNA:   3'- ucaUGCGGUGGGa-------CGCGcGCGa-------GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.