miRNA display CGI


Results 81 - 100 of 799 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6374 3' -61.3 NC_001847.1 + 121847 0.66 0.632318
Target:  5'- cAGccCGgCGCCCgcguaGCGCGCGCacagggcCGGCa -3'
miRNA:   3'- -UCauGCgGUGGGa----CGCGCGCGa------GCCG- -5'
6374 3' -61.3 NC_001847.1 + 121765 0.67 0.612415
Target:  5'- --gGCG-CGCCCggacGUGCGCGCcguucgCGGCu -3'
miRNA:   3'- ucaUGCgGUGGGa---CGCGCGCGa-----GCCG- -5'
6374 3' -61.3 NC_001847.1 + 121208 0.66 0.662153
Target:  5'- cGGgGCgGCCcCCCUGC-CGCGgCgCGGCa -3'
miRNA:   3'- -UCaUG-CGGuGGGACGcGCGC-GaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 121129 0.73 0.294044
Target:  5'- -cUGCGCCGCCgccugCUGcCGUGCuCUCGGCg -3'
miRNA:   3'- ucAUGCGGUGG-----GAC-GCGCGcGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 120729 0.67 0.572829
Target:  5'- cAGU-CGCgACCCgcUGCgagcggggccucGCGCcaGCUCGGCg -3'
miRNA:   3'- -UCAuGCGgUGGG--ACG------------CGCG--CGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 120685 0.76 0.183439
Target:  5'- uGGaGCGCaCGCCgaGCagcgcggccGCGCGCUCGGCg -3'
miRNA:   3'- -UCaUGCG-GUGGgaCG---------CGCGCGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 120402 0.67 0.563016
Target:  5'- gAGcGCGagGCCCgGCGCGCGUaugUgGGCg -3'
miRNA:   3'- -UCaUGCggUGGGaCGCGCGCG---AgCCG- -5'
6374 3' -61.3 NC_001847.1 + 120367 0.71 0.358688
Target:  5'- uGUACGCCGCguuguCCUGCuuGUGCUugaaCGGCg -3'
miRNA:   3'- uCAUGCGGUG-----GGACGcgCGCGA----GCCG- -5'
6374 3' -61.3 NC_001847.1 + 120242 0.74 0.24453
Target:  5'- gAGgcaGUCGgCCUGCGCGCGgaCGGCc -3'
miRNA:   3'- -UCaugCGGUgGGACGCGCGCgaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 120238 0.68 0.543533
Target:  5'- cGUACGCCAaaauuUCCUGCagGCGgGCUUccgugucggGGCu -3'
miRNA:   3'- uCAUGCGGU-----GGGACG--CGCgCGAG---------CCG- -5'
6374 3' -61.3 NC_001847.1 + 119841 0.68 0.505285
Target:  5'- gGGUcGCGCaCGCCC-GCGCGCaGCcagcaGGCg -3'
miRNA:   3'- -UCA-UGCG-GUGGGaCGCGCG-CGag---CCG- -5'
6374 3' -61.3 NC_001847.1 + 119796 0.67 0.592567
Target:  5'- aAGUGagcgaaGCgGCaCUGCGCGCGgaUGGCc -3'
miRNA:   3'- -UCAUg-----CGgUGgGACGCGCGCgaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 119601 0.66 0.642273
Target:  5'- --cGCGCCACCCgGCGaCGaCGa--GGCc -3'
miRNA:   3'- ucaUGCGGUGGGaCGC-GC-GCgagCCG- -5'
6374 3' -61.3 NC_001847.1 + 119587 0.72 0.314532
Target:  5'- cGgcCGCgGCCCgacggccGCGCGCGCacCGGCg -3'
miRNA:   3'- uCauGCGgUGGGa------CGCGCGCGa-GCCG- -5'
6374 3' -61.3 NC_001847.1 + 119345 0.67 0.592567
Target:  5'- cGUAcacCGCCGCCUcccgccGCGCgGCGCUugccgcCGGCg -3'
miRNA:   3'- uCAU---GCGGUGGGa-----CGCG-CGCGA------GCCG- -5'
6374 3' -61.3 NC_001847.1 + 119054 0.68 0.505285
Target:  5'- cGGUACGCCGgCaC-GCGCGCGCguacaacgccaCGGUc -3'
miRNA:   3'- -UCAUGCGGUgG-GaCGCGCGCGa----------GCCG- -5'
6374 3' -61.3 NC_001847.1 + 118970 0.67 0.572829
Target:  5'- aGGUGCGCUACgCgacgaGCGCGg-CGGCg -3'
miRNA:   3'- -UCAUGCGGUGgGacg--CGCGCgaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 118660 0.66 0.662153
Target:  5'- gAGUGCcCCACCCaggcaggGCGgGgGUUgGGCc -3'
miRNA:   3'- -UCAUGcGGUGGGa------CGCgCgCGAgCCG- -5'
6374 3' -61.3 NC_001847.1 + 118631 0.66 0.662153
Target:  5'- --gACGUUACCCUcuccaccucagGcCGCGCGCgggaGGCg -3'
miRNA:   3'- ucaUGCGGUGGGA-----------C-GCGCGCGag--CCG- -5'
6374 3' -61.3 NC_001847.1 + 118166 0.71 0.382338
Target:  5'- gGGcGCGUCuCCCUGCGCuggacgguGCGCgaCGGCa -3'
miRNA:   3'- -UCaUGCGGuGGGACGCG--------CGCGa-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.