miRNA display CGI


Results 41 - 60 of 799 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6374 3' -61.3 NC_001847.1 + 105030 0.75 0.207069
Target:  5'- cAGUAgGCCGCCa-GCGCcgcgGCGCUgGGCg -3'
miRNA:   3'- -UCAUgCGGUGGgaCGCG----CGCGAgCCG- -5'
6374 3' -61.3 NC_001847.1 + 60161 0.76 0.179009
Target:  5'- gGGUGCGCCACgCCcGCGaGCGUgUCGGCc -3'
miRNA:   3'- -UCAUGCGGUG-GGaCGCgCGCG-AGCCG- -5'
6374 3' -61.3 NC_001847.1 + 77705 0.8 0.095403
Target:  5'- cGUGCGCgCGCgCgcugGUGCGCGCUUGGCg -3'
miRNA:   3'- uCAUGCG-GUGgGa---CGCGCGCGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 36371 0.75 0.207069
Target:  5'- --gGCGCCgccgcgGCCCgggcaGCGCGCGCcgCGGCg -3'
miRNA:   3'- ucaUGCGG------UGGGa----CGCGCGCGa-GCCG- -5'
6374 3' -61.3 NC_001847.1 + 83479 0.84 0.055069
Target:  5'- cGUACGCCGCCCUguugcggGCGCaGCGCcgCGGCg -3'
miRNA:   3'- uCAUGCGGUGGGA-------CGCG-CGCGa-GCCG- -5'
6374 3' -61.3 NC_001847.1 + 124549 0.73 0.268367
Target:  5'- cGGgccgGCGCCGgCCcGCGCGCGCgggggggccgcCGGCg -3'
miRNA:   3'- -UCa---UGCGGUgGGaCGCGCGCGa----------GCCG- -5'
6374 3' -61.3 NC_001847.1 + 134855 0.8 0.100434
Target:  5'- gGGgACGgCGCCC-GCGCGgGCUCGGCg -3'
miRNA:   3'- -UCaUGCgGUGGGaCGCGCgCGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 4276 0.73 0.262237
Target:  5'- -uUugGCgGCCaCgagGCGCGCGC-CGGCg -3'
miRNA:   3'- ucAugCGgUGG-Ga--CGCGCGCGaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 89594 0.74 0.256222
Target:  5'- ---cCGCCugCgUGCGCGgGCUCuGGCu -3'
miRNA:   3'- ucauGCGGugGgACGCGCgCGAG-CCG- -5'
6374 3' -61.3 NC_001847.1 + 120242 0.74 0.24453
Target:  5'- gAGgcaGUCGgCCUGCGCGCGgaCGGCc -3'
miRNA:   3'- -UCaugCGGUgGGACGCGCGCgaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 37200 0.74 0.238852
Target:  5'- cGGUGCGaggCGCCCgGUGC-CGCUUGGCg -3'
miRNA:   3'- -UCAUGCg--GUGGGaCGCGcGCGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 88814 0.74 0.232734
Target:  5'- --gACGCgGCCCgcggGCGgccgugcUGCGCUCGGCg -3'
miRNA:   3'- ucaUGCGgUGGGa---CGC-------GCGCGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 104333 0.75 0.2121
Target:  5'- cGUAgGCgGCCUcgGCGCGCGCgaaGGCg -3'
miRNA:   3'- uCAUgCGgUGGGa-CGCGCGCGag-CCG- -5'
6374 3' -61.3 NC_001847.1 + 106046 0.75 0.197316
Target:  5'- --cGCGCCGCCC-GCGcCGUGCUcgcCGGCg -3'
miRNA:   3'- ucaUGCGGUGGGaCGC-GCGCGA---GCCG- -5'
6374 3' -61.3 NC_001847.1 + 31760 0.75 0.197316
Target:  5'- uGGUcaGCGUgCACCC-GCGCGCGC-CGGCc -3'
miRNA:   3'- -UCA--UGCG-GUGGGaCGCGCGCGaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 30885 0.76 0.189805
Target:  5'- -uUGCGCCagucgcccggccgcaGCCCggugagGCGCGCGC-CGGCg -3'
miRNA:   3'- ucAUGCGG---------------UGGGa-----CGCGCGCGaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 64395 0.76 0.187966
Target:  5'- --gGCGcCCGCUCUGCGCgGCGCUauUGGCa -3'
miRNA:   3'- ucaUGC-GGUGGGACGCG-CGCGA--GCCG- -5'
6374 3' -61.3 NC_001847.1 + 11854 0.77 0.162225
Target:  5'- --gGCGCCGCCCUGCGgGCgGCgCGaGCg -3'
miRNA:   3'- ucaUGCGGUGGGACGCgCG-CGaGC-CG- -5'
6374 3' -61.3 NC_001847.1 + 105881 0.77 0.143244
Target:  5'- gGGUGCGCCGCCa---GCGCGUcCGGCg -3'
miRNA:   3'- -UCAUGCGGUGGgacgCGCGCGaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 75942 0.78 0.136237
Target:  5'- cGUGCGCCGCCacacgcgGCGUGUGCUCGuuGCa -3'
miRNA:   3'- uCAUGCGGUGGga-----CGCGCGCGAGC--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.