miRNA display CGI


Results 81 - 100 of 799 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6374 3' -61.3 NC_001847.1 + 73267 0.74 0.250319
Target:  5'- ---uCGCCGugcaacCCCcGCGgGCGCUCGGCa -3'
miRNA:   3'- ucauGCGGU------GGGaCGCgCGCGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 29910 0.73 0.262237
Target:  5'- aAGUGCGCC-CgCCUGUgcccGCGCGCccgCGGUg -3'
miRNA:   3'- -UCAUGCGGuG-GGACG----CGCGCGa--GCCG- -5'
6374 3' -61.3 NC_001847.1 + 35202 0.73 0.268367
Target:  5'- gAGcGCGCgcggcugggCGCCCUGCGCGCGgaCGuGCu -3'
miRNA:   3'- -UCaUGCG---------GUGGGACGCGCGCgaGC-CG- -5'
6374 3' -61.3 NC_001847.1 + 32173 0.73 0.274612
Target:  5'- cGUGCGCgGCggagCUUGgCGCGCGCgCGGCg -3'
miRNA:   3'- uCAUGCGgUG----GGAC-GCGCGCGaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 2373 0.73 0.286145
Target:  5'- cAGU-CGCgCGCCCgcgaagacggcgGUGaCGCGCUCGGCc -3'
miRNA:   3'- -UCAuGCG-GUGGGa-----------CGC-GCGCGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 26369 0.73 0.294044
Target:  5'- gGGUGgGCCGCCCggcaGCGUccgGCGCccagcgCGGCa -3'
miRNA:   3'- -UCAUgCGGUGGGa---CGCG---CGCGa-----GCCG- -5'
6374 3' -61.3 NC_001847.1 + 48146 0.72 0.307585
Target:  5'- aGGUAacCGCCggGCCg-GCGCGCGC-CGGCc -3'
miRNA:   3'- -UCAU--GCGG--UGGgaCGCGCGCGaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 133545 0.75 0.207069
Target:  5'- cAGUGCGCCgcgcgcugGCCCgaGCgGCGCGCU-GGCg -3'
miRNA:   3'- -UCAUGCGG--------UGGGa-CG-CGCGCGAgCCG- -5'
6374 3' -61.3 NC_001847.1 + 13280 0.75 0.197316
Target:  5'- cGGUGC-CgGCCCUGUGCGCGCgcuacgCGGg -3'
miRNA:   3'- -UCAUGcGgUGGGACGCGCGCGa-----GCCg -5'
6374 3' -61.3 NC_001847.1 + 36419 0.76 0.192592
Target:  5'- --cGCGCagACCCUGCGaCGCGCgccguagCGGCg -3'
miRNA:   3'- ucaUGCGg-UGGGACGC-GCGCGa------GCCG- -5'
6374 3' -61.3 NC_001847.1 + 52296 0.72 0.336081
Target:  5'- uGUGCGCgACC--GCGgGCGCgggCGGCg -3'
miRNA:   3'- uCAUGCGgUGGgaCGCgCGCGa--GCCG- -5'
6374 3' -61.3 NC_001847.1 + 3679 0.71 0.3435
Target:  5'- cAGgcCGCCGCgagCCUGCGCGCaccacagguagGCgCGGCa -3'
miRNA:   3'- -UCauGCGGUG---GGACGCGCG-----------CGaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 134202 0.71 0.3435
Target:  5'- cAGU-CGUC-CCCggGCGCGgGCUCGGg -3'
miRNA:   3'- -UCAuGCGGuGGGa-CGCGCgCGAGCCg -5'
6374 3' -61.3 NC_001847.1 + 103833 0.71 0.351036
Target:  5'- cAGgcCGCCGCCCgcgGCGCGcCGCagCaGCa -3'
miRNA:   3'- -UCauGCGGUGGGa--CGCGC-GCGa-GcCG- -5'
6374 3' -61.3 NC_001847.1 + 104394 0.71 0.351036
Target:  5'- --gGCGCgCGCCa-GCGCGcCGCUCGGg -3'
miRNA:   3'- ucaUGCG-GUGGgaCGCGC-GCGAGCCg -5'
6374 3' -61.3 NC_001847.1 + 36817 0.79 0.108451
Target:  5'- cGUGCGCCACCggcgcgccgaCUGggggcuggcggaCGUGCGCUCGGCg -3'
miRNA:   3'- uCAUGCGGUGG----------GAC------------GCGCGCGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 60484 0.78 0.1397
Target:  5'- --gGCGCCGCCgCuuugUGCGCGCGCgggcCGGCg -3'
miRNA:   3'- ucaUGCGGUGG-G----ACGCGCGCGa---GCCG- -5'
6374 3' -61.3 NC_001847.1 + 30150 0.77 0.14687
Target:  5'- cGGcGCGCCgugcGCCCUGgGUgcgugGCGCUCGGCg -3'
miRNA:   3'- -UCaUGCGG----UGGGACgCG-----CGCGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 20116 0.76 0.174673
Target:  5'- cGGacuCGCCGCCCUcaugGCGCGCggcgaacgaaGCUCGGCc -3'
miRNA:   3'- -UCau-GCGGUGGGA----CGCGCG----------CGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 133188 0.76 0.187966
Target:  5'- --gGCGCCGCCCgGCGaggacgaGCGC-CGGCg -3'
miRNA:   3'- ucaUGCGGUGGGaCGCg------CGCGaGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.