miRNA display CGI


Results 21 - 40 of 799 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6374 3' -61.3 NC_001847.1 + 88961 0.66 0.672063
Target:  5'- cGgcCGCUACCgCgUGCGCGUGgUuuaCGGCg -3'
miRNA:   3'- uCauGCGGUGG-G-ACGCGCGCgA---GCCG- -5'
6374 3' -61.3 NC_001847.1 + 95635 0.66 0.672063
Target:  5'- uGGcGgGCCGCUCUG-GCGCGgggggCGGCg -3'
miRNA:   3'- -UCaUgCGGUGGGACgCGCGCga---GCCG- -5'
6374 3' -61.3 NC_001847.1 + 67680 0.66 0.672063
Target:  5'- --gACGCCGCggCCgccgcGCGCGCGCU-GGa -3'
miRNA:   3'- ucaUGCGGUG--GGa----CGCGCGCGAgCCg -5'
6374 3' -61.3 NC_001847.1 + 61965 0.66 0.672063
Target:  5'- --cGCGCCguGCCCgccgGCGCG-GCg-GGCa -3'
miRNA:   3'- ucaUGCGG--UGGGa---CGCGCgCGagCCG- -5'
6374 3' -61.3 NC_001847.1 + 41993 0.66 0.672063
Target:  5'- cGgcCGCCuuuCCCgcgGgGgGCGC-CGGCa -3'
miRNA:   3'- uCauGCGGu--GGGa--CgCgCGCGaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 58846 0.66 0.672063
Target:  5'- cGGUGCccGCgGCgCUGCGUccGCGCgccaGGCa -3'
miRNA:   3'- -UCAUG--CGgUGgGACGCG--CGCGag--CCG- -5'
6374 3' -61.3 NC_001847.1 + 73311 0.66 0.671073
Target:  5'- gAGUACGacaCCACCCUG-GC-CGCcgaccugUUGGCa -3'
miRNA:   3'- -UCAUGC---GGUGGGACgCGcGCG-------AGCCG- -5'
6374 3' -61.3 NC_001847.1 + 40332 0.66 0.671073
Target:  5'- cGgcUGCgGCCCUcggcgaccuugagGUGCGCGUggaggCGGCu -3'
miRNA:   3'- uCauGCGgUGGGA-------------CGCGCGCGa----GCCG- -5'
6374 3' -61.3 NC_001847.1 + 65772 0.66 0.671073
Target:  5'- --aGCGCCACCgccgcaaagaccgCcGCGCGCGC-CaGCa -3'
miRNA:   3'- ucaUGCGGUGG-------------GaCGCGCGCGaGcCG- -5'
6374 3' -61.3 NC_001847.1 + 123448 0.66 0.671073
Target:  5'- gGGUuuGCCgggcuugGCCCgGCgacggccgccGCGgGCUCGGCu -3'
miRNA:   3'- -UCAugCGG-------UGGGaCG----------CGCgCGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 89420 0.66 0.671073
Target:  5'- --gGC-CCGCCUucgGCGUgcacguguaccacGCGCUCGGCc -3'
miRNA:   3'- ucaUGcGGUGGGa--CGCG-------------CGCGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 55120 0.66 0.670083
Target:  5'- --gACGCCgACCCcccccgcgccaaacGCGCGCGCguagagccccccagCGGCc -3'
miRNA:   3'- ucaUGCGG-UGGGa-------------CGCGCGCGa-------------GCCG- -5'
6374 3' -61.3 NC_001847.1 + 98299 0.66 0.669093
Target:  5'- ---cCGCCGCCgaGCGCaCGUccgccagcccccagUCGGCg -3'
miRNA:   3'- ucauGCGGUGGgaCGCGcGCG--------------AGCCG- -5'
6374 3' -61.3 NC_001847.1 + 32362 0.66 0.669093
Target:  5'- gGGUGC-UgGCCUUuuuggugcagaacgGCGCGCGCacgCGGCa -3'
miRNA:   3'- -UCAUGcGgUGGGA--------------CGCGCGCGa--GCCG- -5'
6374 3' -61.3 NC_001847.1 + 131159 0.66 0.662153
Target:  5'- -cUugGCCGCgCUG-GCGCuGCUcaCGGCc -3'
miRNA:   3'- ucAugCGGUGgGACgCGCG-CGA--GCCG- -5'
6374 3' -61.3 NC_001847.1 + 29198 0.66 0.662153
Target:  5'- --gGCGCCGCCggGCucccgGUGCuCUCGGCc -3'
miRNA:   3'- ucaUGCGGUGGgaCG-----CGCGcGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 30769 0.66 0.662153
Target:  5'- --cGCGCCgugcugGCCUcGCgGCGCGUcuUCGGCc -3'
miRNA:   3'- ucaUGCGG------UGGGaCG-CGCGCG--AGCCG- -5'
6374 3' -61.3 NC_001847.1 + 59203 0.66 0.662153
Target:  5'- --cACGCCGCgUgugGCG-GCGCaCGGCg -3'
miRNA:   3'- ucaUGCGGUGgGa--CGCgCGCGaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 62762 0.66 0.662153
Target:  5'- --cGCGuccaccaccaCCACCgaG-GUGCGCUCGGCc -3'
miRNA:   3'- ucaUGC----------GGUGGgaCgCGCGCGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 113958 0.66 0.662153
Target:  5'- -cUACGCCGCCggGCGCGuCGC-C-GCa -3'
miRNA:   3'- ucAUGCGGUGGgaCGCGC-GCGaGcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.