miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6374 5' -48.4 NC_001847.1 + 109714 1.11 0.009926
Target:  5'- gGCGCUGAAGUACGAAGAGAUGUACCUg -3'
miRNA:   3'- -CGCGACUUCAUGCUUCUCUACAUGGA- -5'
6374 5' -48.4 NC_001847.1 + 50643 0.73 0.91597
Target:  5'- cGCGCUGAAGUAUGuggccagcacgcuGGAGGgcgacGUGCCc -3'
miRNA:   3'- -CGCGACUUCAUGCu------------UCUCUa----CAUGGa -5'
6374 5' -48.4 NC_001847.1 + 12984 0.73 0.918408
Target:  5'- gGCGCUGcAGUAcCGGcuGGGGGUGggggGCCUg -3'
miRNA:   3'- -CGCGACuUCAU-GCU--UCUCUACa---UGGA- -5'
6374 5' -48.4 NC_001847.1 + 36142 0.73 0.918408
Target:  5'- aGCGCUGuGGUACGAGgacaccggcGAGAcGUACUg -3'
miRNA:   3'- -CGCGACuUCAUGCUU---------CUCUaCAUGGa -5'
6374 5' -48.4 NC_001847.1 + 92034 0.71 0.968842
Target:  5'- cCGCUccacgucaucGgcGUACGuGGGGAUGUACCg -3'
miRNA:   3'- cGCGA----------CuuCAUGCuUCUCUACAUGGa -5'
6374 5' -48.4 NC_001847.1 + 59550 0.7 0.971921
Target:  5'- gGCGgUGggGgcgGCGggG-GcgGUGCCg -3'
miRNA:   3'- -CGCgACuuCa--UGCuuCuCuaCAUGGa -5'
6374 5' -48.4 NC_001847.1 + 83952 0.7 0.974774
Target:  5'- cGCGC-GggGccggggGCGGAGAcGUGUACCg -3'
miRNA:   3'- -CGCGaCuuCa-----UGCUUCUcUACAUGGa -5'
6374 5' -48.4 NC_001847.1 + 128719 0.7 0.97741
Target:  5'- gGUGC-GggGUGCGAgggggaGGGGGUGgugGCCg -3'
miRNA:   3'- -CGCGaCuuCAUGCU------UCUCUACa--UGGa -5'
6374 5' -48.4 NC_001847.1 + 25906 0.7 0.981851
Target:  5'- gGUGC-GggGUGCGAgggggagGGGGGUGgugGCCg -3'
miRNA:   3'- -CGCGaCuuCAUGCU-------UCUCUACa--UGGa -5'
6374 5' -48.4 NC_001847.1 + 56821 0.69 0.984103
Target:  5'- cGCGcCUGggGgcGCGggGAGggGgcgGCCc -3'
miRNA:   3'- -CGC-GACuuCa-UGCuuCUCuaCa--UGGa -5'
6374 5' -48.4 NC_001847.1 + 34416 0.69 0.984103
Target:  5'- gGCGCUGggGgcgGCGGA-AGAaGUACUUc -3'
miRNA:   3'- -CGCGACuuCa--UGCUUcUCUaCAUGGA- -5'
6374 5' -48.4 NC_001847.1 + 13861 0.69 0.987646
Target:  5'- uCGCUGAuGGUgGCGAGGGGggGcGCCUu -3'
miRNA:   3'- cGCGACU-UCA-UGCUUCUCuaCaUGGA- -5'
6374 5' -48.4 NC_001847.1 + 33726 0.69 0.990546
Target:  5'- -aGCUGggGgaGCGAcgcgcAGAGcUGUACCa -3'
miRNA:   3'- cgCGACuuCa-UGCU-----UCUCuACAUGGa -5'
6374 5' -48.4 NC_001847.1 + 71221 0.68 0.994733
Target:  5'- cGCGCUG-GGUGau-GGAG-UGUGCCa -3'
miRNA:   3'- -CGCGACuUCAUgcuUCUCuACAUGGa -5'
6374 5' -48.4 NC_001847.1 + 56386 0.68 0.994733
Target:  5'- gGCGCUcGGGU-CGggGAGGUcgGCCg -3'
miRNA:   3'- -CGCGAcUUCAuGCuuCUCUAcaUGGa -5'
6374 5' -48.4 NC_001847.1 + 118657 0.67 0.996173
Target:  5'- cGCGCgGGAG-GCGcaaGAGAGGUGU-CCg -3'
miRNA:   3'- -CGCGaCUUCaUGC---UUCUCUACAuGGa -5'
6374 5' -48.4 NC_001847.1 + 53839 0.67 0.996173
Target:  5'- gGCGCUGAAGagccgGCGcGGGGGUcaggggGUGCUg -3'
miRNA:   3'- -CGCGACUUCa----UGCuUCUCUA------CAUGGa -5'
6374 5' -48.4 NC_001847.1 + 72690 0.67 0.996173
Target:  5'- cUGCUGAGGc-CGggGAGAgcgGCCg -3'
miRNA:   3'- cGCGACUUCauGCuuCUCUacaUGGa -5'
6374 5' -48.4 NC_001847.1 + 86024 0.66 0.998423
Target:  5'- gGCGCggcgGGAGcGCGAGGAGGacaaGCCg -3'
miRNA:   3'- -CGCGa---CUUCaUGCUUCUCUaca-UGGa -5'
6374 5' -48.4 NC_001847.1 + 96911 0.66 0.998423
Target:  5'- cGUGCUGGAacACGggGGGGUGcGCg- -3'
miRNA:   3'- -CGCGACUUcaUGCuuCUCUACaUGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.