miRNA display CGI


Results 61 - 80 of 406 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6375 3' -58.5 NC_001847.1 + 59204 0.66 0.75915
Target:  5'- aCGCCGCGuGUgGCggcGCacgGCGGCGc -3'
miRNA:   3'- aGCGGCGCuCAgUGaa-CGg--CGUCGCu -5'
6375 3' -58.5 NC_001847.1 + 61754 0.66 0.755357
Target:  5'- gUCGCUGCGAGgccCACggguuaacggugGCgCGguGCGGg -3'
miRNA:   3'- -AGCGGCGCUCa--GUGaa----------CG-GCguCGCU- -5'
6375 3' -58.5 NC_001847.1 + 65101 0.66 0.75915
Target:  5'- -aGCUGCGAG-CGa--GCCGCGGCu- -3'
miRNA:   3'- agCGGCGCUCaGUgaaCGGCGUCGcu -5'
6375 3' -58.5 NC_001847.1 + 28715 0.66 0.768554
Target:  5'- gCGCCGCGAcGcCAUggccugGCUGCAgagcGCGAa -3'
miRNA:   3'- aGCGGCGCU-CaGUGaa----CGGCGU----CGCU- -5'
6375 3' -58.5 NC_001847.1 + 106287 0.66 0.768554
Target:  5'- gCGCCGcCGGcGUCGCgcgcgcgGCCGC-GCGu -3'
miRNA:   3'- aGCGGC-GCU-CAGUGaa-----CGGCGuCGCu -5'
6375 3' -58.5 NC_001847.1 + 109419 0.66 0.768554
Target:  5'- cCGCCGCuucucGUCcuuCUcggGCCGCAGUGGc -3'
miRNA:   3'- aGCGGCGcu---CAGu--GAa--CGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 115708 0.66 0.768554
Target:  5'- -gGCUGCGGcccguGUgCGCUUGCCGCcacgGGCGc -3'
miRNA:   3'- agCGGCGCU-----CA-GUGAACGGCG----UCGCu -5'
6375 3' -58.5 NC_001847.1 + 81169 0.66 0.75915
Target:  5'- cCGCCGCGc--CGCUcggaggGCuCGCGGCGGc -3'
miRNA:   3'- aGCGGCGCucaGUGAa-----CG-GCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 56513 0.66 0.776916
Target:  5'- gCGCCGCcaaaaagcaccagGAcGUgGaagUGCCGCGGCGGc -3'
miRNA:   3'- aGCGGCG-------------CU-CAgUga-ACGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 69217 0.66 0.777839
Target:  5'- gCGuCCGCGGGgaaCGCcgacGCCGCgacGGCGAa -3'
miRNA:   3'- aGC-GGCGCUCa--GUGaa--CGGCG---UCGCU- -5'
6375 3' -58.5 NC_001847.1 + 33243 0.66 0.75915
Target:  5'- gCGCCGCGGcgccucCGC-UGCCGCGGUc- -3'
miRNA:   3'- aGCGGCGCUca----GUGaACGGCGUCGcu -5'
6375 3' -58.5 NC_001847.1 + 87671 0.66 0.761983
Target:  5'- gCGCCGCauggcccGGG-CGCUggggcugcugcggcGCCGCGGCGGc -3'
miRNA:   3'- aGCGGCG-------CUCaGUGAa-------------CGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 18525 0.66 0.768554
Target:  5'- gCGCUGCGGG-CGCgccGCCGUccgcgccgcagAGCGGc -3'
miRNA:   3'- aGCGGCGCUCaGUGaa-CGGCG-----------UCGCU- -5'
6375 3' -58.5 NC_001847.1 + 31315 0.66 0.756307
Target:  5'- gCGCCGCGGGcggcggccugguggaGCgcgUGCCGCcgccGGCGGc -3'
miRNA:   3'- aGCGGCGCUCag-------------UGa--ACGGCG----UCGCU- -5'
6375 3' -58.5 NC_001847.1 + 94621 0.67 0.720518
Target:  5'- aCGUCGCGcGUCGCgcgcaGCCGCcgGGCa- -3'
miRNA:   3'- aGCGGCGCuCAGUGaa---CGGCG--UCGcu -5'
6375 3' -58.5 NC_001847.1 + 100862 0.67 0.700719
Target:  5'- -gGCCGCGAG-CGCggcgcccaGCCGCcGCGc -3'
miRNA:   3'- agCGGCGCUCaGUGaa------CGGCGuCGCu -5'
6375 3' -58.5 NC_001847.1 + 123056 0.67 0.700719
Target:  5'- -gGCCGCGGG-CGCcggacCCGCGGCGc -3'
miRNA:   3'- agCGGCGCUCaGUGaac--GGCGUCGCu -5'
6375 3' -58.5 NC_001847.1 + 14633 0.67 0.710651
Target:  5'- uUCGaCCGCGGcGcUCGCgcGCCGCucgcuGCGAg -3'
miRNA:   3'- -AGC-GGCGCU-C-AGUGaaCGGCGu----CGCU- -5'
6375 3' -58.5 NC_001847.1 + 53436 0.67 0.710651
Target:  5'- gUCGgCGCG---CGCgUGCCGCAGCGc -3'
miRNA:   3'- -AGCgGCGCucaGUGaACGGCGUCGCu -5'
6375 3' -58.5 NC_001847.1 + 19510 0.67 0.710651
Target:  5'- gUGUCGCGGGaucgCGCUUGCgGCAGa-- -3'
miRNA:   3'- aGCGGCGCUCa---GUGAACGgCGUCgcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.