miRNA display CGI


Results 81 - 100 of 406 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6375 3' -58.5 NC_001847.1 + 47857 0.67 0.73031
Target:  5'- -gGCCGCG-GcCGCggGCCGuCGGCGc -3'
miRNA:   3'- agCGGCGCuCaGUGaaCGGC-GUCGCu -5'
6375 3' -58.5 NC_001847.1 + 57469 0.67 0.749636
Target:  5'- -gGaCCGCGAGUU-CUUGCCGCuagaAGUGu -3'
miRNA:   3'- agC-GGCGCUCAGuGAACGGCG----UCGCu -5'
6375 3' -58.5 NC_001847.1 + 91054 0.67 0.749636
Target:  5'- -gGCgGCGGG-CGCagacGCCGCAGCa- -3'
miRNA:   3'- agCGgCGCUCaGUGaa--CGGCGUCGcu -5'
6375 3' -58.5 NC_001847.1 + 123056 0.67 0.700719
Target:  5'- -gGCCGCGGG-CGCcggacCCGCGGCGc -3'
miRNA:   3'- agCGGCGCUCaGUGaac--GGCGUCGCu -5'
6375 3' -58.5 NC_001847.1 + 112948 0.67 0.749636
Target:  5'- gUGCUGgGAGgCGC-UGCUGCAGCu- -3'
miRNA:   3'- aGCGGCgCUCaGUGaACGGCGUCGcu -5'
6375 3' -58.5 NC_001847.1 + 11561 0.67 0.700719
Target:  5'- gCGCCcaGCGGGUgCGgcUGCCGCGGUGc -3'
miRNA:   3'- aGCGG--CGCUCA-GUgaACGGCGUCGCu -5'
6375 3' -58.5 NC_001847.1 + 2580 0.67 0.740019
Target:  5'- gCGCCuGCGcGGcCGCcgcgGCCGCAcGCGAg -3'
miRNA:   3'- aGCGG-CGC-UCaGUGaa--CGGCGU-CGCU- -5'
6375 3' -58.5 NC_001847.1 + 89316 0.67 0.749636
Target:  5'- cCGCCcaGCGAGUgGCccggGCgGCAGCu- -3'
miRNA:   3'- aGCGG--CGCUCAgUGaa--CGgCGUCGcu -5'
6375 3' -58.5 NC_001847.1 + 89888 0.67 0.710651
Target:  5'- uUCGCCGCGc-UCAC--GCCGgCGGCGc -3'
miRNA:   3'- -AGCGGCGCucAGUGaaCGGC-GUCGCu -5'
6375 3' -58.5 NC_001847.1 + 106665 0.67 0.710651
Target:  5'- gCGCCGCGGcGUCcgcggcGCgucgUGCCaCGGCGGc -3'
miRNA:   3'- aGCGGCGCU-CAG------UGa---ACGGcGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 82944 0.67 0.749636
Target:  5'- -gGCCGCGAccCGCggccagGCCGCcuGCGAu -3'
miRNA:   3'- agCGGCGCUcaGUGaa----CGGCGu-CGCU- -5'
6375 3' -58.5 NC_001847.1 + 69847 0.67 0.710651
Target:  5'- -aGCCGCGAGUUcccuagccgauuACguaggcccGCCGCuGCGGa -3'
miRNA:   3'- agCGGCGCUCAG------------UGaa------CGGCGuCGCU- -5'
6375 3' -58.5 NC_001847.1 + 59348 0.67 0.720518
Target:  5'- -gGCgGCGAgGUCGCgcGCCGCGcCGAg -3'
miRNA:   3'- agCGgCGCU-CAGUGaaCGGCGUcGCU- -5'
6375 3' -58.5 NC_001847.1 + 114889 0.67 0.720518
Target:  5'- cUCGCCGUc--UCGCUcucgcgGCCGCAGCu- -3'
miRNA:   3'- -AGCGGCGcucAGUGAa-----CGGCGUCGcu -5'
6375 3' -58.5 NC_001847.1 + 94621 0.67 0.720518
Target:  5'- aCGUCGCGcGUCGCgcgcaGCCGCcgGGCa- -3'
miRNA:   3'- aGCGGCGCuCAGUGaa---CGGCG--UCGcu -5'
6375 3' -58.5 NC_001847.1 + 131446 0.67 0.720518
Target:  5'- aUUGCCGCGccuaccuguGGUgCGCgcagGCuCGCGGCGGc -3'
miRNA:   3'- -AGCGGCGC---------UCA-GUGaa--CG-GCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 14633 0.67 0.710651
Target:  5'- uUCGaCCGCGGcGcUCGCgcGCCGCucgcuGCGAg -3'
miRNA:   3'- -AGC-GGCGCU-C-AGUGaaCGGCGu----CGCU- -5'
6375 3' -58.5 NC_001847.1 + 53436 0.67 0.710651
Target:  5'- gUCGgCGCG---CGCgUGCCGCAGCGc -3'
miRNA:   3'- -AGCgGCGCucaGUGaACGGCGUCGCu -5'
6375 3' -58.5 NC_001847.1 + 38653 0.67 0.73031
Target:  5'- cCGCCGCG------UUGCCGUGGCGAc -3'
miRNA:   3'- aGCGGCGCucagugAACGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 17867 0.67 0.737116
Target:  5'- gCGCCGcCGGGUCGCccGUCcucgggcggggcggGCGGCGGc -3'
miRNA:   3'- aGCGGC-GCUCAGUGaaCGG--------------CGUCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.