Results 61 - 80 of 406 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6375 | 3' | -58.5 | NC_001847.1 | + | 12923 | 0.71 | 0.510396 |
Target: 5'- cCGCCGCGGGggCGCgcgUGUCGUcguGCGGu -3' miRNA: 3'- aGCGGCGCUCa-GUGa--ACGGCGu--CGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 1474 | 0.71 | 0.510396 |
Target: 5'- cCGCCGCG-G-CAga-GCCGCAGCGGc -3' miRNA: 3'- aGCGGCGCuCaGUgaaCGGCGUCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 101378 | 0.71 | 0.463196 |
Target: 5'- gCGCCGCGGGg-GCUgcCCGCGGCGc -3' miRNA: 3'- aGCGGCGCUCagUGAacGGCGUCGCu -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 64439 | 0.71 | 0.462275 |
Target: 5'- cUCGCCGCGGG-CGCccccGCCGCcgcccgcGGCGGc -3' miRNA: 3'- -AGCGGCGCUCaGUGaa--CGGCG-------UCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 58439 | 0.71 | 0.463196 |
Target: 5'- cUCGCCGUcGGcCAUUUccaGCCGCAGCGc -3' miRNA: 3'- -AGCGGCGcUCaGUGAA---CGGCGUCGCu -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 45383 | 0.71 | 0.472459 |
Target: 5'- aCGCCgGCGcGUgCACgUGCCGCAGCc- -3' miRNA: 3'- aGCGG-CGCuCA-GUGaACGGCGUCGcu -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 116362 | 0.71 | 0.500786 |
Target: 5'- cCGCCGCGGagcucgcgcuGUCGgccgccgcCUUaGCCGCGGCGGc -3' miRNA: 3'- aGCGGCGCU----------CAGU--------GAA-CGGCGUCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 42893 | 0.71 | 0.510396 |
Target: 5'- gCGCCaaGAG-CGCgaGCUGCAGCGGc -3' miRNA: 3'- aGCGGcgCUCaGUGaaCGGCGUCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 104330 | 0.71 | 0.491257 |
Target: 5'- cCGCCGcCGuGUU---UGCCGCGGCGGc -3' miRNA: 3'- aGCGGC-GCuCAGugaACGGCGUCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 116690 | 0.71 | 0.478998 |
Target: 5'- gCGCUGCGGG-CGCggcaccgcacggcugGCCGCGGCGc -3' miRNA: 3'- aGCGGCGCUCaGUGaa-------------CGGCGUCGCu -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 85851 | 0.71 | 0.463196 |
Target: 5'- cCGCCagcaGCGAGUCGCg-GCuccgCGCGGCGAg -3' miRNA: 3'- aGCGG----CGCUCAGUGaaCG----GCGUCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 44887 | 0.71 | 0.472459 |
Target: 5'- -gGCCGCGugaacgagcgcGUCACa-GCCGCGGCGGc -3' miRNA: 3'- agCGGCGCu----------CAGUGaaCGGCGUCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 99372 | 0.71 | 0.490309 |
Target: 5'- gCGCCguuagcggguGCGAGUCgaugauagagcgcGCUUGCUGCAGCc- -3' miRNA: 3'- aGCGG----------CGCUCAG-------------UGAACGGCGUCGcu -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 4423 | 0.71 | 0.481814 |
Target: 5'- -gGCgGCGAG-CGCgcGCCGCAGgGAa -3' miRNA: 3'- agCGgCGCUCaGUGaaCGGCGUCgCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 40172 | 0.71 | 0.472459 |
Target: 5'- -aGCCGCGGGg-GC-UGCgCGCGGCGGa -3' miRNA: 3'- agCGGCGCUCagUGaACG-GCGUCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 131959 | 0.71 | 0.481814 |
Target: 5'- cCGCUGCGccGUCGCcUGCCGCgaGGCGc -3' miRNA: 3'- aGCGGCGCu-CAGUGaACGGCG--UCGCu -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 84358 | 0.71 | 0.500786 |
Target: 5'- gCGCCGCGAGgugUAUUgagcgGCCGCGgaccGCGGc -3' miRNA: 3'- aGCGGCGCUCa--GUGAa----CGGCGU----CGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 13135 | 0.71 | 0.500786 |
Target: 5'- gCGCCGCGc--CGCcUGCCGCGGCc- -3' miRNA: 3'- aGCGGCGCucaGUGaACGGCGUCGcu -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 127052 | 0.71 | 0.463196 |
Target: 5'- gCGCCGCG--UCGCcgaucucGCCGCGGCGGu -3' miRNA: 3'- aGCGGCGCucAGUGaa-----CGGCGUCGCU- -5' |
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6375 | 3' | -58.5 | NC_001847.1 | + | 29146 | 0.71 | 0.481814 |
Target: 5'- cCGCUGCGccGUCGCcUGCCGCgaGGCGc -3' miRNA: 3'- aGCGGCGCu-CAGUGaACGGCG--UCGCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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