miRNA display CGI


Results 61 - 80 of 406 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6375 3' -58.5 NC_001847.1 + 45383 0.71 0.472459
Target:  5'- aCGCCgGCGcGUgCACgUGCCGCAGCc- -3'
miRNA:   3'- aGCGG-CGCuCA-GUGaACGGCGUCGcu -5'
6375 3' -58.5 NC_001847.1 + 44887 0.71 0.472459
Target:  5'- -gGCCGCGugaacgagcgcGUCACa-GCCGCGGCGGc -3'
miRNA:   3'- agCGGCGCu----------CAGUGaaCGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 116690 0.71 0.478998
Target:  5'- gCGCUGCGGG-CGCggcaccgcacggcugGCCGCGGCGc -3'
miRNA:   3'- aGCGGCGCUCaGUGaa-------------CGGCGUCGCu -5'
6375 3' -58.5 NC_001847.1 + 124312 0.71 0.481814
Target:  5'- gCGCCGCc-GUCGCgcgcaggUGCUGCAGCa- -3'
miRNA:   3'- aGCGGCGcuCAGUGa------ACGGCGUCGcu -5'
6375 3' -58.5 NC_001847.1 + 4423 0.71 0.481814
Target:  5'- -gGCgGCGAG-CGCgcGCCGCAGgGAa -3'
miRNA:   3'- agCGgCGCUCaGUGaaCGGCGUCgCU- -5'
6375 3' -58.5 NC_001847.1 + 131959 0.71 0.481814
Target:  5'- cCGCUGCGccGUCGCcUGCCGCgaGGCGc -3'
miRNA:   3'- aGCGGCGCu-CAGUGaACGGCG--UCGCu -5'
6375 3' -58.5 NC_001847.1 + 29146 0.71 0.481814
Target:  5'- cCGCUGCGccGUCGCcUGCCGCgaGGCGc -3'
miRNA:   3'- aGCGGCGCu-CAGUGaACGGCG--UCGCu -5'
6375 3' -58.5 NC_001847.1 + 99372 0.71 0.490309
Target:  5'- gCGCCguuagcggguGCGAGUCgaugauagagcgcGCUUGCUGCAGCc- -3'
miRNA:   3'- aGCGG----------CGCUCAG-------------UGAACGGCGUCGcu -5'
6375 3' -58.5 NC_001847.1 + 104330 0.71 0.491257
Target:  5'- cCGCCGcCGuGUU---UGCCGCGGCGGc -3'
miRNA:   3'- aGCGGC-GCuCAGugaACGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 116362 0.71 0.500786
Target:  5'- cCGCCGCGGagcucgcgcuGUCGgccgccgcCUUaGCCGCGGCGGc -3'
miRNA:   3'- aGCGGCGCU----------CAGU--------GAA-CGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 84045 0.71 0.500786
Target:  5'- cUCGCgCGCGAGUCGCUaGa-GCAGCc- -3'
miRNA:   3'- -AGCG-GCGCUCAGUGAaCggCGUCGcu -5'
6375 3' -58.5 NC_001847.1 + 84358 0.71 0.500786
Target:  5'- gCGCCGCGAGgugUAUUgagcgGCCGCGgaccGCGGc -3'
miRNA:   3'- aGCGGCGCUCa--GUGAa----CGGCGU----CGCU- -5'
6375 3' -58.5 NC_001847.1 + 42117 0.71 0.500786
Target:  5'- gCGCCGgGGGcCGCUUcCCGCguuGGCGAg -3'
miRNA:   3'- aGCGGCgCUCaGUGAAcGGCG---UCGCU- -5'
6375 3' -58.5 NC_001847.1 + 129193 0.71 0.500786
Target:  5'- gCGCgCGCGcGUacguacgcgCGCUUGCuCGCGGCGAc -3'
miRNA:   3'- aGCG-GCGCuCA---------GUGAACG-GCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 13135 0.71 0.500786
Target:  5'- gCGCCGCGc--CGCcUGCCGCGGCc- -3'
miRNA:   3'- aGCGGCGCucaGUGaACGGCGUCGcu -5'
6375 3' -58.5 NC_001847.1 + 40932 0.71 0.500786
Target:  5'- cCGCCGCGAGcucCGCc-GCgCGCAGCGc -3'
miRNA:   3'- aGCGGCGCUCa--GUGaaCG-GCGUCGCu -5'
6375 3' -58.5 NC_001847.1 + 132289 0.71 0.500786
Target:  5'- aCGcCCGCGAGUCGCa-GCgGCAugGCGGa -3'
miRNA:   3'- aGC-GGCGCUCAGUGaaCGgCGU--CGCU- -5'
6375 3' -58.5 NC_001847.1 + 12923 0.71 0.510396
Target:  5'- cCGCCGCGGGggCGCgcgUGUCGUcguGCGGu -3'
miRNA:   3'- aGCGGCGCUCa-GUGa--ACGGCGu--CGCU- -5'
6375 3' -58.5 NC_001847.1 + 29199 0.71 0.510396
Target:  5'- gCGCCGcCGGGcUCccgguGCUcucgGCCGCGGCGGg -3'
miRNA:   3'- aGCGGC-GCUC-AG-----UGAa---CGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 42893 0.71 0.510396
Target:  5'- gCGCCaaGAG-CGCgaGCUGCAGCGGc -3'
miRNA:   3'- aGCGGcgCUCaGUGaaCGGCGUCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.