miRNA display CGI


Results 81 - 100 of 406 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6375 3' -58.5 NC_001847.1 + 12923 0.71 0.510396
Target:  5'- cCGCCGCGGGggCGCgcgUGUCGUcguGCGGu -3'
miRNA:   3'- aGCGGCGCUCa-GUGa--ACGGCGu--CGCU- -5'
6375 3' -58.5 NC_001847.1 + 104287 0.71 0.510396
Target:  5'- cCGCCGCG-G-CAga-GCCGCAGCGGc -3'
miRNA:   3'- aGCGGCGCuCaGUgaaCGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 8068 0.71 0.510396
Target:  5'- cCGCgCGCaGAGgggggCACc-GCCGCGGCGAg -3'
miRNA:   3'- aGCG-GCG-CUCa----GUGaaCGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 132012 0.71 0.510396
Target:  5'- gCGCCGcCGGGcUCccgguGCUcucgGCCGCGGCGGg -3'
miRNA:   3'- aGCGGC-GCUC-AG-----UGAa---CGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 89519 0.71 0.510396
Target:  5'- gCGCCGCGcuGcCGCcggGCgGCAGCGAc -3'
miRNA:   3'- aGCGGCGCu-CaGUGaa-CGgCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 120393 0.7 0.520081
Target:  5'- aCGCCGCGGGcgACUgcuucguuaUGCUGCAGaCGAc -3'
miRNA:   3'- aGCGGCGCUCagUGA---------ACGGCGUC-GCU- -5'
6375 3' -58.5 NC_001847.1 + 5195 0.7 0.520081
Target:  5'- gCGCCGCGAG-CGCggcaaGCgCGCcGCGAc -3'
miRNA:   3'- aGCGGCGCUCaGUGaa---CG-GCGuCGCU- -5'
6375 3' -58.5 NC_001847.1 + 102848 0.7 0.520081
Target:  5'- cCGCgGCGGcGUCGCgggGCCGCGccacGCGGa -3'
miRNA:   3'- aGCGgCGCU-CAGUGaa-CGGCGU----CGCU- -5'
6375 3' -58.5 NC_001847.1 + 125032 0.7 0.526903
Target:  5'- cUCGCCGCGAaggcggcuuuccccGcCGCUUGUgcucccgcgCGCGGCGGg -3'
miRNA:   3'- -AGCGGCGCU--------------CaGUGAACG---------GCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 133672 0.7 0.529837
Target:  5'- cCGCUGCGGcUC---UGCCGCGGCGGc -3'
miRNA:   3'- aGCGGCGCUcAGugaACGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 30859 0.7 0.529837
Target:  5'- cCGCUGCGGcUC---UGCCGCGGCGGc -3'
miRNA:   3'- aGCGGCGCUcAGugaACGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 13822 0.7 0.529837
Target:  5'- aCGCgaGCGAGaUCGUUUGCCGCGcGCGGc -3'
miRNA:   3'- aGCGg-CGCUC-AGUGAACGGCGU-CGCU- -5'
6375 3' -58.5 NC_001847.1 + 3544 0.7 0.529837
Target:  5'- -gGCCGCGAG-CGCg-GCgGCGGCGu -3'
miRNA:   3'- agCGGCGCUCaGUGaaCGgCGUCGCu -5'
6375 3' -58.5 NC_001847.1 + 91620 0.7 0.529837
Target:  5'- -gGCCGCGAGgaagcccgCGCgcGCCGCccaguAGCGAu -3'
miRNA:   3'- agCGGCGCUCa-------GUGaaCGGCG-----UCGCU- -5'
6375 3' -58.5 NC_001847.1 + 58542 0.7 0.53966
Target:  5'- cCGCCGCG-GUCuuCgccGCCGcCAGCGGc -3'
miRNA:   3'- aGCGGCGCuCAGu-Gaa-CGGC-GUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 19334 0.7 0.53966
Target:  5'- cCGCCGCagcgcAGcgCGCggaGCCGCAGCGGc -3'
miRNA:   3'- aGCGGCGc----UCa-GUGaa-CGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 131199 0.7 0.53966
Target:  5'- gCGCUGUGGGUCGCgcucGCCGCccgcugccAGCGc -3'
miRNA:   3'- aGCGGCGCUCAGUGaa--CGGCG--------UCGCu -5'
6375 3' -58.5 NC_001847.1 + 64251 0.7 0.53966
Target:  5'- gUGCCGCGAGUaGCgguCCGCAGgCGGu -3'
miRNA:   3'- aGCGGCGCUCAgUGaacGGCGUC-GCU- -5'
6375 3' -58.5 NC_001847.1 + 58731 0.7 0.53966
Target:  5'- cCGCCGCGGGgugCcCccGCCGCGGCc- -3'
miRNA:   3'- aGCGGCGCUCa--GuGaaCGGCGUCGcu -5'
6375 3' -58.5 NC_001847.1 + 52248 0.7 0.53966
Target:  5'- gCGCCGCGcGcCGCggcuugGCUGCGGCGc -3'
miRNA:   3'- aGCGGCGCuCaGUGaa----CGGCGUCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.