miRNA display CGI


Results 61 - 80 of 406 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6375 3' -58.5 NC_001847.1 + 48834 0.66 0.75915
Target:  5'- cUUGCCGCGcGGgggCGCcucgGCCGCGcggcGCGAg -3'
miRNA:   3'- -AGCGGCGC-UCa--GUGaa--CGGCGU----CGCU- -5'
6375 3' -58.5 NC_001847.1 + 92147 0.66 0.75915
Target:  5'- cCGuCCGCGGG--GCccGCCGaCAGCGAa -3'
miRNA:   3'- aGC-GGCGCUCagUGaaCGGC-GUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 65101 0.66 0.75915
Target:  5'- -aGCUGCGAG-CGa--GCCGCGGCu- -3'
miRNA:   3'- agCGGCGCUCaGUgaaCGGCGUCGcu -5'
6375 3' -58.5 NC_001847.1 + 87867 0.66 0.75915
Target:  5'- -gGCCuGUG-GUCGCUgugGCCGC-GCGGc -3'
miRNA:   3'- agCGG-CGCuCAGUGAa--CGGCGuCGCU- -5'
6375 3' -58.5 NC_001847.1 + 52666 0.66 0.75915
Target:  5'- -gGCCGCGGGcucguccCACggcacGCCGCAcGCGGc -3'
miRNA:   3'- agCGGCGCUCa------GUGaa---CGGCGU-CGCU- -5'
6375 3' -58.5 NC_001847.1 + 54369 0.66 0.75915
Target:  5'- gCGCUGCGcga-GC-UGCUGCGGCGGg -3'
miRNA:   3'- aGCGGCGCucagUGaACGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 33243 0.66 0.75915
Target:  5'- gCGCCGCGGcgccucCGC-UGCCGCGGUc- -3'
miRNA:   3'- aGCGGCGCUca----GUGaACGGCGUCGcu -5'
6375 3' -58.5 NC_001847.1 + 82616 0.66 0.75915
Target:  5'- gCGCCGCGcGcuggaGCUUGCCGC-GCu- -3'
miRNA:   3'- aGCGGCGCuCag---UGAACGGCGuCGcu -5'
6375 3' -58.5 NC_001847.1 + 81169 0.66 0.75915
Target:  5'- cCGCCGCGc--CGCUcggaggGCuCGCGGCGGc -3'
miRNA:   3'- aGCGGCGCucaGUGAa-----CG-GCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 30800 0.66 0.75915
Target:  5'- aCGCCGcCGcGUCugccGCCGCGGCa- -3'
miRNA:   3'- aGCGGC-GCuCAGugaaCGGCGUCGcu -5'
6375 3' -58.5 NC_001847.1 + 94226 0.66 0.75915
Target:  5'- cUCGCgGCGGGgcgcccgCGCggcGCCGUggAGCGGc -3'
miRNA:   3'- -AGCGgCGCUCa------GUGaa-CGGCG--UCGCU- -5'
6375 3' -58.5 NC_001847.1 + 31315 0.66 0.756307
Target:  5'- gCGCCGCGGGcggcggccugguggaGCgcgUGCCGCcgccGGCGGc -3'
miRNA:   3'- aGCGGCGCUCag-------------UGa--ACGGCG----UCGCU- -5'
6375 3' -58.5 NC_001847.1 + 134128 0.66 0.756307
Target:  5'- gCGCCGCGGGcggcggccugguggaGCgcgUGCCGCcgccGGCGGc -3'
miRNA:   3'- aGCGGCGCUCag-------------UGa--ACGGCG----UCGCU- -5'
6375 3' -58.5 NC_001847.1 + 61754 0.66 0.755357
Target:  5'- gUCGCUGCGAGgccCACggguuaacggugGCgCGguGCGGg -3'
miRNA:   3'- -AGCGGCGCUCa--GUGaa----------CG-GCguCGCU- -5'
6375 3' -58.5 NC_001847.1 + 91054 0.67 0.749636
Target:  5'- -gGCgGCGGG-CGCagacGCCGCAGCa- -3'
miRNA:   3'- agCGgCGCUCaGUGaa--CGGCGUCGcu -5'
6375 3' -58.5 NC_001847.1 + 112948 0.67 0.749636
Target:  5'- gUGCUGgGAGgCGC-UGCUGCAGCu- -3'
miRNA:   3'- aGCGGCgCUCaGUGaACGGCGUCGcu -5'
6375 3' -58.5 NC_001847.1 + 113960 0.67 0.749636
Target:  5'- aCGCCGcCGGG-CGCgucGCCGCAGa-- -3'
miRNA:   3'- aGCGGC-GCUCaGUGaa-CGGCGUCgcu -5'
6375 3' -58.5 NC_001847.1 + 10135 0.67 0.749636
Target:  5'- gUGCUGgGAGgCGC-UGCUGCAGCu- -3'
miRNA:   3'- aGCGGCgCUCaGUGaACGGCGUCGcu -5'
6375 3' -58.5 NC_001847.1 + 82944 0.67 0.749636
Target:  5'- -gGCCGCGAccCGCggccagGCCGCcuGCGAu -3'
miRNA:   3'- agCGGCGCUcaGUGaa----CGGCGu-CGCU- -5'
6375 3' -58.5 NC_001847.1 + 34254 0.67 0.749636
Target:  5'- gCGgCGCGAGgCGCagaccgGCgCGCGGCGGc -3'
miRNA:   3'- aGCgGCGCUCaGUGaa----CG-GCGUCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.