miRNA display CGI


Results 61 - 80 of 406 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6375 3' -58.5 NC_001847.1 + 22045 0.69 0.630084
Target:  5'- uUCGCUGCugGAGUCGC-UGCCGCucacgucGCa- -3'
miRNA:   3'- -AGCGGCG--CUCAGUGaACGGCGu------CGcu -5'
6375 3' -58.5 NC_001847.1 + 26306 0.66 0.777839
Target:  5'- cUCGCgGCGAGUCG--UGggGCAGCGu -3'
miRNA:   3'- -AGCGgCGCUCAGUgaACggCGUCGCu -5'
6375 3' -58.5 NC_001847.1 + 27104 0.69 0.589573
Target:  5'- uUUGCCGCGcG-CGCcccgccggccGCCGCGGCGAg -3'
miRNA:   3'- -AGCGGCGCuCaGUGaa--------CGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 27143 0.68 0.670616
Target:  5'- cUGCCGUccGGGgggCGCa-GCCGCGGCGGc -3'
miRNA:   3'- aGCGGCG--CUCa--GUGaaCGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 27337 0.69 0.599673
Target:  5'- cCGCCGCGcuuuGcCGCggccGCCGCAGCc- -3'
miRNA:   3'- aGCGGCGCu---CaGUGaa--CGGCGUCGcu -5'
6375 3' -58.5 NC_001847.1 + 27963 0.69 0.630084
Target:  5'- gCGCuCGCG-GUCGCgguggaggcgGCCGCGGCc- -3'
miRNA:   3'- aGCG-GCGCuCAGUGaa--------CGGCGUCGcu -5'
6375 3' -58.5 NC_001847.1 + 27987 0.68 0.650379
Target:  5'- gCGCCGCGcuGGgccgCGCUgcaGCgCGCGGCGu -3'
miRNA:   3'- aGCGGCGC--UCa---GUGAa--CG-GCGUCGCu -5'
6375 3' -58.5 NC_001847.1 + 28376 0.68 0.69073
Target:  5'- cUCGCCGCcgGAGacggCGCcccccccGCCGCGGCGc -3'
miRNA:   3'- -AGCGGCG--CUCa---GUGaa-----CGGCGUCGCu -5'
6375 3' -58.5 NC_001847.1 + 28492 0.67 0.704699
Target:  5'- aCGCCGCGGcgccGcCGCUagcgcgcgcgcuuuuUGCCGUGGCGc -3'
miRNA:   3'- aGCGGCGCU----CaGUGA---------------ACGGCGUCGCu -5'
6375 3' -58.5 NC_001847.1 + 28715 0.66 0.768554
Target:  5'- gCGCCGCGAcGcCAUggccugGCUGCAgagcGCGAa -3'
miRNA:   3'- aGCGGCGCU-CaGUGaa----CGGCGU----CGCU- -5'
6375 3' -58.5 NC_001847.1 + 28887 0.69 0.589573
Target:  5'- gCGCUGUGGG-CGC-UGCCGCacguGGCGGc -3'
miRNA:   3'- aGCGGCGCUCaGUGaACGGCG----UCGCU- -5'
6375 3' -58.5 NC_001847.1 + 28948 0.75 0.294265
Target:  5'- -aGCCGUgGAGaCGCUgGCCGCGGCGGg -3'
miRNA:   3'- agCGGCG-CUCaGUGAaCGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 29093 0.66 0.777839
Target:  5'- cCGCCgGCGAGcacggCGCggGCgGCGcGCGAg -3'
miRNA:   3'- aGCGG-CGCUCa----GUGaaCGgCGU-CGCU- -5'
6375 3' -58.5 NC_001847.1 + 29146 0.71 0.481814
Target:  5'- cCGCUGCGccGUCGCcUGCCGCgaGGCGc -3'
miRNA:   3'- aGCGGCGCu-CAGUGaACGGCG--UCGCu -5'
6375 3' -58.5 NC_001847.1 + 29199 0.71 0.510396
Target:  5'- gCGCCGcCGGGcUCccgguGCUcucgGCCGCGGCGGg -3'
miRNA:   3'- aGCGGC-GCUC-AG-----UGAa---CGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 29329 0.66 0.768554
Target:  5'- -aGCCGCGAG-CGCgagUGC-GCGGgCGGc -3'
miRNA:   3'- agCGGCGCUCaGUGa--ACGgCGUC-GCU- -5'
6375 3' -58.5 NC_001847.1 + 29503 0.7 0.559483
Target:  5'- -gGCCGCGGGcggCGCUucgGCCGCAGa-- -3'
miRNA:   3'- agCGGCGCUCa--GUGAa--CGGCGUCgcu -5'
6375 3' -58.5 NC_001847.1 + 30396 0.7 0.569472
Target:  5'- gCGCCGgcggccCGAGUgGCcgccgcGCCGCGGCGGg -3'
miRNA:   3'- aGCGGC------GCUCAgUGaa----CGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 30710 0.72 0.409744
Target:  5'- gCGCCGCG-GU-GC-UGCCGCGGCGc -3'
miRNA:   3'- aGCGGCGCuCAgUGaACGGCGUCGCu -5'
6375 3' -58.5 NC_001847.1 + 30800 0.66 0.75915
Target:  5'- aCGCCGcCGcGUCugccGCCGCGGCa- -3'
miRNA:   3'- aGCGGC-GCuCAGugaaCGGCGUCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.