miRNA display CGI


Results 81 - 100 of 406 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6375 3' -58.5 NC_001847.1 + 30859 0.7 0.529837
Target:  5'- cCGCUGCGGcUC---UGCCGCGGCGGc -3'
miRNA:   3'- aGCGGCGCUcAGugaACGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 30865 0.65 0.802242
Target:  5'- cUCGCCGaaguCGAuggcguuugcgccaGUCGCccgGCCGCAGCc- -3'
miRNA:   3'- -AGCGGC----GCU--------------CAGUGaa-CGGCGUCGcu -5'
6375 3' -58.5 NC_001847.1 + 31042 0.67 0.73031
Target:  5'- aCGCCGgcCGAcGUCGCggucGCCGCuGUGGg -3'
miRNA:   3'- aGCGGC--GCU-CAGUGaa--CGGCGuCGCU- -5'
6375 3' -58.5 NC_001847.1 + 31137 0.68 0.69073
Target:  5'- gCGcCCGaCGAGcUGCcgGCCGCGGCGGu -3'
miRNA:   3'- aGC-GGC-GCUCaGUGaaCGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 31209 0.75 0.315176
Target:  5'- cCGCCGCuGGU-GCUggagGCCGCGGCGGc -3'
miRNA:   3'- aGCGGCGcUCAgUGAa---CGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 31315 0.66 0.756307
Target:  5'- gCGCCGCGGGcggcggccugguggaGCgcgUGCCGCcgccGGCGGc -3'
miRNA:   3'- aGCGGCGCUCag-------------UGa--ACGGCG----UCGCU- -5'
6375 3' -58.5 NC_001847.1 + 31422 0.69 0.609796
Target:  5'- gCGCCgGCGGGcgGCggccggcgGCCGCGGCGGc -3'
miRNA:   3'- aGCGG-CGCUCagUGaa------CGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 31716 0.68 0.680692
Target:  5'- -aGgCGCGGGcCGCgcGCCGCuGCGGa -3'
miRNA:   3'- agCgGCGCUCaGUGaaCGGCGuCGCU- -5'
6375 3' -58.5 NC_001847.1 + 31906 0.7 0.569472
Target:  5'- cCGCCGC-AGaUCACggccgcgGCCGCGGCu- -3'
miRNA:   3'- aGCGGCGcUC-AGUGaa-----CGGCGUCGcu -5'
6375 3' -58.5 NC_001847.1 + 31936 0.74 0.360302
Target:  5'- cCGCgGCGGGUaagcggacgaGCcUGCCGCGGCGGc -3'
miRNA:   3'- aGCGgCGCUCAg---------UGaACGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 31998 0.67 0.710651
Target:  5'- -aGCCGCGAGgaccuUCGCgcGCCgGCGGCc- -3'
miRNA:   3'- agCGGCGCUC-----AGUGaaCGG-CGUCGcu -5'
6375 3' -58.5 NC_001847.1 + 32127 0.66 0.777839
Target:  5'- cCGCCGCcGG-CGCUgggcGCCGCcGCGc -3'
miRNA:   3'- aGCGGCGcUCaGUGAa---CGGCGuCGCu -5'
6375 3' -58.5 NC_001847.1 + 32587 0.66 0.786995
Target:  5'- -aGCUGCGccuAGUCGCggccGCCGUcGCGGc -3'
miRNA:   3'- agCGGCGC---UCAGUGaa--CGGCGuCGCU- -5'
6375 3' -58.5 NC_001847.1 + 33006 0.7 0.549544
Target:  5'- cCGCCGUG-GUCGCgcggagUGCCGCcGCc- -3'
miRNA:   3'- aGCGGCGCuCAGUGa-----ACGGCGuCGcu -5'
6375 3' -58.5 NC_001847.1 + 33134 0.66 0.786995
Target:  5'- -gGCgGCGAG-CGCUU-CCGCguGGCGAn -3'
miRNA:   3'- agCGgCGCUCaGUGAAcGGCG--UCGCU- -5'
6375 3' -58.5 NC_001847.1 + 33159 0.7 0.559483
Target:  5'- gCGCgGCG-GUUGCgccGCUGCAGCGGc -3'
miRNA:   3'- aGCGgCGCuCAGUGaa-CGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 33243 0.66 0.75915
Target:  5'- gCGCCGCGGcgccucCGC-UGCCGCGGUc- -3'
miRNA:   3'- aGCGGCGCUca----GUGaACGGCGUCGcu -5'
6375 3' -58.5 NC_001847.1 + 33495 0.66 0.768554
Target:  5'- cCGCgGCGGcggCGCggGCgGCGGCGGg -3'
miRNA:   3'- aGCGgCGCUca-GUGaaCGgCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 33642 0.67 0.700719
Target:  5'- cUGaCCGCGAGgcgcgcgcgCGCgugGCCGCGGCc- -3'
miRNA:   3'- aGC-GGCGCUCa--------GUGaa-CGGCGUCGcu -5'
6375 3' -58.5 NC_001847.1 + 33766 0.68 0.69073
Target:  5'- gCGCCGCGGG-CAgcccCCGCGGCGc -3'
miRNA:   3'- aGCGGCGCUCaGUgaacGGCGUCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.