miRNA display CGI


Results 101 - 120 of 406 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6375 3' -58.5 NC_001847.1 + 34097 0.68 0.650379
Target:  5'- cCGCCGUGGcUCGC--GCgGCGGCGGa -3'
miRNA:   3'- aGCGGCGCUcAGUGaaCGgCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 34130 0.69 0.599673
Target:  5'- -gGCCGCGgcggcggcAGUaACUgccGCCGCGGCGGc -3'
miRNA:   3'- agCGGCGC--------UCAgUGAa--CGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 34133 0.76 0.274451
Target:  5'- cUGCCGCG-GUgGCc-GCCGCGGCGAg -3'
miRNA:   3'- aGCGGCGCuCAgUGaaCGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 34254 0.67 0.749636
Target:  5'- gCGgCGCGAGgCGCagaccgGCgCGCGGCGGc -3'
miRNA:   3'- aGCgGCGCUCaGUGaa----CG-GCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 34289 0.72 0.435998
Target:  5'- gCGCCGCGc-UCGCg-GCCGuCAGCGAg -3'
miRNA:   3'- aGCGGCGCucAGUGaaCGGC-GUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 34458 0.68 0.660509
Target:  5'- -gGCCGCG-GUgGCc-GCCGgCGGCGAg -3'
miRNA:   3'- agCGGCGCuCAgUGaaCGGC-GUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 34772 0.66 0.777839
Target:  5'- -gGCUGCGcGcCGCg-GCCGCGGCGc -3'
miRNA:   3'- agCGGCGCuCaGUGaaCGGCGUCGCu -5'
6375 3' -58.5 NC_001847.1 + 34919 0.68 0.680692
Target:  5'- cUCGCCaGCGAGagaGC-UGCUGCGGgGGg -3'
miRNA:   3'- -AGCGG-CGCUCag-UGaACGGCGUCgCU- -5'
6375 3' -58.5 NC_001847.1 + 35607 0.66 0.796014
Target:  5'- cUGCUGCGcaUCACgccGCCGcCGGCGGc -3'
miRNA:   3'- aGCGGCGCucAGUGaa-CGGC-GUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 36010 0.66 0.768554
Target:  5'- -gGCCGCGGGcguggUGCUgggGCUGCGcGCGGa -3'
miRNA:   3'- agCGGCGCUCa----GUGAa--CGGCGU-CGCU- -5'
6375 3' -58.5 NC_001847.1 + 36141 0.73 0.401214
Target:  5'- gCGCCGCG-GaCGCggGCCuGCAGCGGc -3'
miRNA:   3'- aGCGGCGCuCaGUGaaCGG-CGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 36323 0.69 0.630084
Target:  5'- cCGCCGCGAGggUGCguccUGCCGCccCGAu -3'
miRNA:   3'- aGCGGCGCUCa-GUGa---ACGGCGucGCU- -5'
6375 3' -58.5 NC_001847.1 + 36351 0.66 0.768554
Target:  5'- gCGCCGCG-G-CGCgcGCaCGCGGCGn -3'
miRNA:   3'- aGCGGCGCuCaGUGaaCG-GCGUCGCu -5'
6375 3' -58.5 NC_001847.1 + 36375 0.76 0.268088
Target:  5'- cCGCCGCGgcccGGgcagCGCgcGCCGCGGCGAc -3'
miRNA:   3'- aGCGGCGC----UCa---GUGaaCGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 37199 0.67 0.73031
Target:  5'- cCGgUGCGAGgCGCccggUGCCGCuuGGCGGc -3'
miRNA:   3'- aGCgGCGCUCaGUGa---ACGGCG--UCGCU- -5'
6375 3' -58.5 NC_001847.1 + 37571 0.68 0.650379
Target:  5'- aCGCgGCGgcgcuGGcCGCUgcgGCUGCGGCGGc -3'
miRNA:   3'- aGCGgCGC-----UCaGUGAa--CGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 38058 0.68 0.640235
Target:  5'- cCGCCGCGGcuaaGC-UGCgCGCGGCGGc -3'
miRNA:   3'- aGCGGCGCUcag-UGaACG-GCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 38323 0.68 0.650379
Target:  5'- aCGcCCGCGcGGUCGCc-GCCGCuGCGc -3'
miRNA:   3'- aGC-GGCGC-UCAGUGaaCGGCGuCGCu -5'
6375 3' -58.5 NC_001847.1 + 38653 0.67 0.73031
Target:  5'- cCGCCGCG------UUGCCGUGGCGAc -3'
miRNA:   3'- aGCGGCGCucagugAACGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 38956 0.76 0.261845
Target:  5'- -gGCCGCGAG-CGCcauggcggcgGCCGCGGCGGg -3'
miRNA:   3'- agCGGCGCUCaGUGaa--------CGGCGUCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.