miRNA display CGI


Results 41 - 60 of 406 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6375 3' -58.5 NC_001847.1 + 120717 0.67 0.710651
Target:  5'- gCGCCGuCGAggcaGUCGCgacCCGCuGCGAg -3'
miRNA:   3'- aGCGGC-GCU----CAGUGaacGGCGuCGCU- -5'
6375 3' -58.5 NC_001847.1 + 120501 0.67 0.700719
Target:  5'- cUCGCaGCGAGcggCGCgcgagcGCCGCGGuCGAa -3'
miRNA:   3'- -AGCGgCGCUCa--GUGaa----CGGCGUC-GCU- -5'
6375 3' -58.5 NC_001847.1 + 120393 0.7 0.520081
Target:  5'- aCGCCGCGGGcgACUgcuucguuaUGCUGCAGaCGAc -3'
miRNA:   3'- aGCGGCGCUCagUGA---------ACGGCGUC-GCU- -5'
6375 3' -58.5 NC_001847.1 + 120339 0.67 0.749636
Target:  5'- gCGCCGCGca--GCUccGCCGCuGCGGu -3'
miRNA:   3'- aGCGGCGCucagUGAa-CGGCGuCGCU- -5'
6375 3' -58.5 NC_001847.1 + 120148 0.67 0.740019
Target:  5'- cCGCgGcCGAGgggCGCUUGCCaagcuugcGCAGCa- -3'
miRNA:   3'- aGCGgC-GCUCa--GUGAACGG--------CGUCGcu -5'
6375 3' -58.5 NC_001847.1 + 119851 0.68 0.664555
Target:  5'- aCGCCGUGccGGUCAgcgucgggaucggcaUUgcgGCUGCGGCGAu -3'
miRNA:   3'- aGCGGCGC--UCAGU---------------GAa--CGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 119731 0.66 0.777839
Target:  5'- cUCGCCGUGccgCGCUccaggGCCGCccaguGGCGGa -3'
miRNA:   3'- -AGCGGCGCucaGUGAa----CGGCG-----UCGCU- -5'
6375 3' -58.5 NC_001847.1 + 119361 0.82 0.106343
Target:  5'- cCGCCGCGcGG-CGCUUGCCGcCGGCGAa -3'
miRNA:   3'- aGCGGCGC-UCaGUGAACGGC-GUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 119104 0.69 0.605745
Target:  5'- cCGCCGCGGGgcggcggggcaggCAUgggGCCGUcgauGGCGAg -3'
miRNA:   3'- aGCGGCGCUCa------------GUGaa-CGGCG----UCGCU- -5'
6375 3' -58.5 NC_001847.1 + 116959 0.68 0.69073
Target:  5'- cUCGCCGCGcGUCcgccauggGCccGCUGgGGCGAg -3'
miRNA:   3'- -AGCGGCGCuCAG--------UGaaCGGCgUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 116690 0.71 0.478998
Target:  5'- gCGCUGCGGG-CGCggcaccgcacggcugGCCGCGGCGc -3'
miRNA:   3'- aGCGGCGCUCaGUGaa-------------CGGCGUCGCu -5'
6375 3' -58.5 NC_001847.1 + 116362 0.71 0.500786
Target:  5'- cCGCCGCGGagcucgcgcuGUCGgccgccgcCUUaGCCGCGGCGGc -3'
miRNA:   3'- aGCGGCGCU----------CAGU--------GAA-CGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 116176 0.72 0.444963
Target:  5'- gCGCCGCGGccgcgcuggucGUCGCcgccacggacGCCGCGGCGGc -3'
miRNA:   3'- aGCGGCGCU-----------CAGUGaa--------CGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 115912 0.68 0.69073
Target:  5'- -gGCuCGCGcAGgCGCUggcUGUCGCAGCGGc -3'
miRNA:   3'- agCG-GCGC-UCaGUGA---ACGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 115802 0.68 0.670616
Target:  5'- cCGCUGCGGcuccgcgCGCUgcGCUGCGGCGGg -3'
miRNA:   3'- aGCGGCGCUca-----GUGAa-CGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 115708 0.66 0.768554
Target:  5'- -gGCUGCGGcccguGUgCGCUUGCCGCcacgGGCGc -3'
miRNA:   3'- agCGGCGCU-----CA-GUGAACGGCG----UCGCu -5'
6375 3' -58.5 NC_001847.1 + 115418 0.66 0.783349
Target:  5'- cCGCCGCGuccggccaaccucGUCGCgggGCCGgAGCc- -3'
miRNA:   3'- aGCGGCGCu------------CAGUGaa-CGGCgUCGcu -5'
6375 3' -58.5 NC_001847.1 + 114889 0.67 0.720518
Target:  5'- cUCGCCGUc--UCGCUcucgcgGCCGCAGCu- -3'
miRNA:   3'- -AGCGGCGcucAGUGAa-----CGGCGUCGcu -5'
6375 3' -58.5 NC_001847.1 + 114235 0.68 0.69073
Target:  5'- -gGCCGcCGAGUguguguUUUGCCGCuGCGGg -3'
miRNA:   3'- agCGGC-GCUCAgu----GAACGGCGuCGCU- -5'
6375 3' -58.5 NC_001847.1 + 114103 0.67 0.740019
Target:  5'- -gGCCGgGGGUCucggggcaaGCUUGCuCGCAcGCGc -3'
miRNA:   3'- agCGGCgCUCAG---------UGAACG-GCGU-CGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.