miRNA display CGI


Results 81 - 100 of 406 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6375 3' -58.5 NC_001847.1 + 105614 0.68 0.640235
Target:  5'- -gGCCGCGAG-CGCg-GCCGcCAGCc- -3'
miRNA:   3'- agCGGCGCUCaGUGaaCGGC-GUCGcu -5'
6375 3' -58.5 NC_001847.1 + 105164 0.68 0.679686
Target:  5'- cCGCCGCGccggcccGGcCGCgucgGCgGCGGCGGc -3'
miRNA:   3'- aGCGGCGC-------UCaGUGaa--CGgCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 104884 0.73 0.392798
Target:  5'- gCGCCGCGGcgCGCUgcaacGCCGCcAGCGAc -3'
miRNA:   3'- aGCGGCGCUcaGUGAa----CGGCG-UCGCU- -5'
6375 3' -58.5 NC_001847.1 + 104714 0.75 0.298359
Target:  5'- gCGCCGCGAG-CGCgugcgagagcccGCCGCGGCGc -3'
miRNA:   3'- aGCGGCGCUCaGUGaa----------CGGCGUCGCu -5'
6375 3' -58.5 NC_001847.1 + 104376 0.69 0.589573
Target:  5'- gCGCCGCGAGgccagCACggcGCgCGcCAGCGc -3'
miRNA:   3'- aGCGGCGCUCa----GUGaa-CG-GC-GUCGCu -5'
6375 3' -58.5 NC_001847.1 + 104330 0.71 0.491257
Target:  5'- cCGCCGcCGuGUU---UGCCGCGGCGGc -3'
miRNA:   3'- aGCGGC-GCuCAGugaACGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 104287 0.71 0.510396
Target:  5'- cCGCCGCG-G-CAga-GCCGCAGCGGc -3'
miRNA:   3'- aGCGGCGCuCaGUgaaCGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 104043 0.7 0.549544
Target:  5'- gCGCCGCccgcaggccaGGUaCACcgGCCGCAGCGGc -3'
miRNA:   3'- aGCGGCGc---------UCA-GUGaaCGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 103917 0.7 0.559483
Target:  5'- -gGCCGCGGGcggCGCc-GCCGCGGCc- -3'
miRNA:   3'- agCGGCGCUCa--GUGaaCGGCGUCGcu -5'
6375 3' -58.5 NC_001847.1 + 103223 0.7 0.559483
Target:  5'- cCGCCgcGCGAGcCGCg-GCCGCGGCc- -3'
miRNA:   3'- aGCGG--CGCUCaGUGaaCGGCGUCGcu -5'
6375 3' -58.5 NC_001847.1 + 102983 0.69 0.579504
Target:  5'- cCGCCGCGcacgccGUCGCggcgUGCgcgggCGCGGCGGc -3'
miRNA:   3'- aGCGGCGCu-----CAGUGa---ACG-----GCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 102848 0.7 0.520081
Target:  5'- cCGCgGCGGcGUCGCgggGCCGCGccacGCGGa -3'
miRNA:   3'- aGCGgCGCU-CAGUGaa-CGGCGU----CGCU- -5'
6375 3' -58.5 NC_001847.1 + 102286 0.66 0.796014
Target:  5'- cCGCCGUGAgGUCGauggGCC-CGGCGu -3'
miRNA:   3'- aGCGGCGCU-CAGUgaa-CGGcGUCGCu -5'
6375 3' -58.5 NC_001847.1 + 102071 0.74 0.33719
Target:  5'- gCGCCGCGcAGaaagUAC-UGCCGCAGCGc -3'
miRNA:   3'- aGCGGCGC-UCa---GUGaACGGCGUCGCu -5'
6375 3' -58.5 NC_001847.1 + 101960 0.72 0.45403
Target:  5'- -gGCCGCGAGcUCGCggGCCGUcacGGCa- -3'
miRNA:   3'- agCGGCGCUC-AGUGaaCGGCG---UCGcu -5'
6375 3' -58.5 NC_001847.1 + 101458 0.67 0.740019
Target:  5'- gCGCCGCGAGcgccugcgccUCuagccccgcGCggGCCGCGGCc- -3'
miRNA:   3'- aGCGGCGCUC----------AG---------UGaaCGGCGUCGcu -5'
6375 3' -58.5 NC_001847.1 + 101378 0.71 0.463196
Target:  5'- gCGCCGCGGGg-GCUgcCCGCGGCGc -3'
miRNA:   3'- aGCGGCGCUCagUGAacGGCGUCGCu -5'
6375 3' -58.5 NC_001847.1 + 101107 0.68 0.650379
Target:  5'- gCGCCGCGGGgcccaUCGCcugGCC-CAGCGc -3'
miRNA:   3'- aGCGGCGCUC-----AGUGaa-CGGcGUCGCu -5'
6375 3' -58.5 NC_001847.1 + 101050 0.66 0.786995
Target:  5'- cCGCCgcGCGAGcCACggcgGCCGCcacGCGc -3'
miRNA:   3'- aGCGG--CGCUCaGUGaa--CGGCGu--CGCu -5'
6375 3' -58.5 NC_001847.1 + 101003 0.74 0.344772
Target:  5'- cCGCCGCGgcggcAGUUACUgccGCCGCcGCGGc -3'
miRNA:   3'- aGCGGCGC-----UCAGUGAa--CGGCGuCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.